View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_high_33 (Length: 321)

Name: NF16123_high_33
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_high_33
NF16123_high_33
[»] chr8 (1 HSPs)
chr8 (9-305)||(10203097-10203384)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 10203097 - 10203384
Alignment:
Q  9 agcaaaggtcgagttgctatttgaatttggaaacaagagtactgtggaacacactatgcctgttggtgagaattgatggaaggagtaaatgagtaagtgt 108  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10203097 agcaaaggtcgtgttgctatttgagtttggaaacaagagtgctgtggaacac--tatgcctgttggtgagaattgatggaaggagtaaacgagtaagtgt 10203194  T
Q  109 gaagtcgtgggtgaattcagaccgagaattcttccacttgaataattaatgtatttaatctattagactaaatatatgagatatacaataatttnnnnnn 208  Q
    |||||||||||||||||||||| ||||||||||||||||||||||   |||||||| |||||||||| |||||       ||||||||||||||          
T  10203195 gaagtcgtgggtgaattcagacagagaattcttccacttgaataaccgatgtatttgatctattagattaaat-------atatacaataatttaaaaaa 10203287  T
Q  209 nnnttatactagttgtatatcaagattaaactcacaaaattgactgtgagttcgttaattatgtaaaatcgattctatataaaagtgtatagaaaat 305  Q
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10203288 aaattatactagttgtatatcaaaattaaactcacaaaattgactgtgagttcgttaattatgtataatcgattctatataaaagtgtatagaaaat 10203384  T

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