View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_36 (Length: 315)
Name: NF16123_high_36
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 411915 - 412082
Alignment:
| Q |
12 |
atgaagttaatgagtctctgattttagtagaaagcttgagaaatttgttatgaagtaatggatgatagagtataaataaaactagctgaaaacaaaagca |
111 |
Q |
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| T |
411915 |
atgaagttaatgagtctctgattttagtagaaagcttgagaaatttgttatgaagtaatggatgatagagtataaataaaactagctgaaaacaaaagca |
412014 |
T |
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| Q |
112 |
gctagtagtgtgtgacctgtactaagttttgtatcatggtttttctagctttaaatatgtacaaacta |
179 |
Q |
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| T |
412015 |
gctagtagtgtgtgacctgtactaagttttgtatcatggtttttctagctttaaatatgtacaaacta |
412082 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 412131 - 412197
Alignment:
| Q |
228 |
caaagttgcaaaactagtgcaattatttgaaagggaaaaggtaggtaagaatcataatgtgatgtac |
294 |
Q |
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| T |
412131 |
caaagttgcaaaactaatgcaattatttgaaagggaaaaggtaggtaagaatcataatgtgatgtac |
412197 |
T |
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