View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_41 (Length: 288)
Name: NF16123_high_41
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_41 |
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| [»] scaffold0008 (3 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 49915 - 49804
Alignment:
| Q |
1 |
ggaaatattttggtgttgttcatccttggaggtatttttgcaggtgtaacagctgattggttatggttaattggtaaaggatggtgagagatctcagcca |
100 |
Q |
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| T |
49915 |
ggaaatatcttggtgttgttcatccttggaggtatttttgcaggtgtaacagctgattggttatggttaattggtaaaggatggtgagagatctcaacca |
49816 |
T |
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| Q |
101 |
tgctaaattaga |
112 |
Q |
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| T |
49815 |
tgctaaattaga |
49804 |
T |
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Target: scaffold0008; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 62085 - 61997
Alignment:
| Q |
1 |
ggaaatattttggtgttgttcatccttggaggtatttttgcaggtgtaacagctgattggttatggttaattggtaaaggatggtgaga |
89 |
Q |
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| T |
62085 |
ggaaatatcttggtgttgtttcttctaggaggtatttttgcaggggtaacacttgattggttatggttaataggtaaaggatggtgaga |
61997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 49769 - 49714
Alignment:
| Q |
207 |
tgaatatgtttagtgtttgcattttgtacaaagctaaatccaatttcggttaattt |
262 |
Q |
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| T |
49769 |
tgaatatgtttggtgttttcattatgtacaaagctaaatccaattttggttaattt |
49714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 21091607 - 21091669
Alignment:
| Q |
25 |
cttggaggtatttttgcaggtgtaacagctgattggttatggttaattggtaaaggatggtga |
87 |
Q |
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| T |
21091607 |
cttggaggtctttttgtaggggtaacacttgactggctatggttaataggtaaaggatggtga |
21091669 |
T |
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