View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_42 (Length: 282)
Name: NF16123_high_42
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 23736753 - 23736569
Alignment:
| Q |
14 |
gtttccatcaggttgttaaagaatattacccaaatatttagcaattgagttatataaatatgactattgtgtaattgagttatatacacaatatgcatat |
113 |
Q |
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| T |
23736753 |
gtttccatcaggttgttaaagaatactacccaaatatttagcaattgagttctataaatatgactattgtgtaattgagttatatacacaatatgcttat |
23736654 |
T |
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| Q |
114 |
ttggtgtaattgagttctataaatatgagtattatgtatataactcaaagtattttatcaattacaatgattctttatgagtttc |
198 |
Q |
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| T |
23736653 |
ttggtgtaattgagttttataaatatgagcattgtgtatataactcaatgtattttatcaattacaatgattctttatgagtttc |
23736569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 23736542 - 23736457
Alignment:
| Q |
195 |
tttctctctaatctgtatgttctatgatcctatcattccatgattcctaacgtcacttgttagaacgacaagaatcctttgcttct |
280 |
Q |
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| T |
23736542 |
tttctctctaatttgtatgatctatgatcctatcattccatgattcctaacgtcacttgttagaacgacaagaatcctttgtttct |
23736457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 23838399 - 23838314
Alignment:
| Q |
112 |
atttggtgtaattgagttctataaatatgagtattatgtatataactcaaagtattttatcaattacaatgattctttatgagtttct |
199 |
Q |
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| T |
23838399 |
atttggtgtaatggatttctataaatatgactattgtgtatataa--caacatattttatgaattagaatgattctttatgagtttct |
23838314 |
T |
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