View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_47 (Length: 270)
Name: NF16123_high_47
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_47 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 33319007 - 33318823
Alignment:
| Q |
81 |
cctaatggaataaaactaaggtgaagaaaaaatagtatgtttccaacaaccaaatagatgtccatcctcttttaaaagccatctcaatagctaatatatc |
180 |
Q |
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| T |
33319007 |
cctaatggaataaaattaaggtgaagaaaaaatagtatgtttccaac---caaatagatgtccatcctcttttaaaagccatctcaatagctaatatatc |
33318911 |
T |
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| Q |
181 |
actatgatgttcaacattaaaggaggaagatataattaaattacaaatataacaaccaagatcaatagctttagtatctttaaaaatacc |
270 |
Q |
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| T |
33318910 |
actatgat--tcaacattaaaggaggaagatataattaaattacaaatataacaaccaagatcaatagctttagtatctttaaaaatacc |
33318823 |
T |
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