View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_52 (Length: 263)
Name: NF16123_high_52
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34044296 - 34044051
Alignment:
| Q |
1 |
tgcatctttctccttgagcttacatgatttttagtttgaataatttgaacatgcatgattgaagttagatttaggcccttttataagagactttcataca |
100 |
Q |
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| T |
34044296 |
tgcatctttctccttgagcttacatgatttttagtttgaataatttgaacatgcatgattgaagttagatttaggcccttttataagagactttcataca |
34044197 |
T |
|
| Q |
101 |
ataaaaggaaaacacgtcaaacctttgtgtgctattggttacttcatgcccaaataggaaaacttgtcaaagctcatttcccattggttatctcatgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34044196 |
ataaaaggaaaacacgtcaaacctttgtgtgctattggttacttcatgcccaaataggaaaacttgtcaaagctcatttcccattggttatctcatgtca |
34044097 |
T |
|
| Q |
201 |
aaattggaaaatgccttaaaaggttgtttctcattggttgcttcat |
246 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34044096 |
aaattggaaaattccttaaaaggttgtttctcattggttgcttcat |
34044051 |
T |
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