View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_53 (Length: 259)
Name: NF16123_high_53
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 25044169 - 25043906
Alignment:
| Q |
1 |
agactccatgaatacacttattttatggattatggaaatgtgtaattttccttatgtattcagcaaaaaacaaaaaacaa-------ttttaagttttat |
93 |
Q |
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| T |
25044169 |
agactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattcagcaaaaaccaaaaaccaaaaaccaattttaagttttat |
25044070 |
T |
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| Q |
94 |
gaattttgttctgtcannnnnnnnnn----------atattttatattgaatttgattcaaatctttatatacactatcctcgttaaagcatgtgacttt |
183 |
Q |
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| T |
25044069 |
gaattttgttctgtcatttttttttttattttttttatatttcatattgaatttgattcaaatctttatatacactatcctcgttaaagcatacgacttt |
25043970 |
T |
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| Q |
184 |
gtgagttcctttatataaccatgcaccataatcacataatctttatataaccattagaccccct |
247 |
Q |
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| T |
25043969 |
gtgagttcctttatataaccatgcagcataatcacataatctttatataaccattagaccccct |
25043906 |
T |
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Back To:
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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 28649647 - 28649464
Alignment:
| Q |
1 |
agactccatgaatacacttattttatggattatggaaatgtgtaattttccttatgtattcagcaaaaaacaaaaaacaattttaagttttatgaatttt |
100 |
Q |
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| T |
28649647 |
agactccatgaattcgcttatagtatggattatggaaatgtataattttccttatgaatttagcaaaa---------caattttaaattttatgaatttt |
28649557 |
T |
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| Q |
101 |
gttctgtcannnnnnnnnnatattttatattgaatttgattcaaatctttatatacactatcctcgttaaagcatgtgactttgtgagttcctttat |
197 |
Q |
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| T |
28649556 |
gttctgtcatttttt----atgtttcatattgaatatgattcaaatttatatatacactctcctcatcaaagcatgcgactttgtgagttcctttat |
28649464 |
T |
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