View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_high_55 (Length: 254)
Name: NF16123_high_55
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 32611885 - 32611665
Alignment:
| Q |
19 |
aatcccttctcacaatctcaccgttcatcttcattctccccccactttcctcaacctcacctnnnnnnnnnnnnnnnnngacctcttctttagggttccg |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32611885 |
aatcccttctcacaatcttaccgttcatcttcattctccacccactttcctcaacctcacctccaccaccaccaccaccgacctcttctttagggttccg |
32611786 |
T |
|
| Q |
119 |
attcccaatgtactactcgacgccgacttccctcccaccgttcgatcattcaccgatcacatcgaagtcaaattgcttctcttacttcccgtcgaccacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32611785 |
attcccaatgtactactcgacgccgacttccctcccaccgttcgatcattcaccgatcacatcgaagtcaaattgcttctcttacttcccgtcgaccacc |
32611686 |
T |
|
| Q |
219 |
ctgttctctccgcacttcatc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32611685 |
ctgttctctccgcacttcatc |
32611665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University