View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_61 (Length: 248)
Name: NF16123_high_61
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 8358588 - 8358396
Alignment:
| Q |
43 |
caagcaacgtgtgaaaatcacgcccgtgaattatttatttcctctataatattactcgtaagcaatataattgagtttaaaatatgtctctcatattttc |
142 |
Q |
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| T |
8358588 |
caagcaacgtgtgaaaatcacgtccgtgaattatttatttcctctataatattacttgtaagcaatataattgagtttaaaatatgtctctcatattttc |
8358489 |
T |
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| Q |
143 |
ttttctaaattaatataata-----taattaatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaa |
230 |
Q |
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| T |
8358488 |
ttttctaaattaatataatataatataattaatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaa |
8358396 |
T |
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Back To:
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 28593124 - 28593160
Alignment:
| Q |
180 |
tctctgtaatttgttgcagaacaagtctcctagattt |
216 |
Q |
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| T |
28593124 |
tctctgtaatttgttgcataacaagtctcctagattt |
28593160 |
T |
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