View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_64 (Length: 239)
Name: NF16123_high_64
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9162646 - 9162869
Alignment:
| Q |
1 |
acaccacaatagtttaccataattgcattagttagatagattgcatcattataatccaacattgacaaaaaatatcagtcacagattcattctaaagatt |
100 |
Q |
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| T |
9162646 |
acaccacaatagtttaccataattgcattagttagatagattgcatcattataatccaacattgacaaaaaatatcagtcacagattcattctaaagatt |
9162745 |
T |
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| Q |
101 |
aaagtaatcttcataaaattttaatgtgacataagtgtgaaactaaagccaatttatagttttatactcttttagtcccataataattgtcacatttgca |
200 |
Q |
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| T |
9162746 |
aaagtaatcttcataaaattttaatgtgacataagtgtgaaactaaagccaatttatagttttatactcttttagtcccataataattgtcacatttgca |
9162845 |
T |
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| Q |
201 |
aaagaaaaactgtcccaaaaaatt |
224 |
Q |
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| T |
9162846 |
aaagaaaaactgtcccaaaaaatt |
9162869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 9150030 - 9150180
Alignment:
| Q |
32 |
ttagatagattgcatcattataatccaacattgacaaaaaatatcagtcacagattcattctaaagattaaagtaatcttcataaaattttaatgtgaca |
131 |
Q |
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|||| |||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||| | ||||||||| |||||| | |
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| T |
9150030 |
ttagttagattgcatcattttaatccaacattgacaaa---tatcagtcagaaattcattctaatgattaaagtaatcataataaaatttagatgtgaga |
9150126 |
T |
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| Q |
132 |
taagtgtgaaactaaagccaatttatagttttatactcttttagtcccataata |
185 |
Q |
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| T |
9150127 |
taagtgtgaaactgaaaccaatttatagttttatattctttccgtcccctaata |
9150180 |
T |
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