View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_66 (Length: 237)
Name: NF16123_high_66
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 2470083 - 2470310
Alignment:
| Q |
17 |
gaaagaccatactaatttattcatatttatttgtattgtcacttgtttcaatttagctata----------------gcatatcaagataaaataaaacc |
100 |
Q |
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| T |
2470083 |
gaaagaccatactaagtgattcatatttatttgtattgtcacttgtttcaatttagctatataagaagctatatatagcatataaagataaaataaaacc |
2470182 |
T |
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| Q |
101 |
caaaaaacgtagcaaattaatgagtttgaaatttgtggtgtttaactgtattaagtgatttccctttctaatttcctatctctttctctctcactctatc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2470183 |
caaaaatcgtagcaaattaatgagtttgaaatttgtggtgtttaactgtattaagtgatttccctttcgtatttcctatctctttctctctcactctatc |
2470282 |
T |
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| Q |
201 |
tccctgaagagatcttggatagaataat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2470283 |
tccctgaagagatcttggatagaataat |
2470310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 2474354 - 2474418
Alignment:
| Q |
17 |
gaaagaccatactaatttattcatatttatttgtattgtcacttgt----ttcaatttagctata |
77 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
2474354 |
gaaagaccatactaattgattcatatttgtttgtattgtcacttgtttgtttcaatttagctata |
2474418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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