View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_high_70 (Length: 205)

Name: NF16123_high_70
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_high_70
NF16123_high_70
[»] chr3 (7 HSPs)
chr3 (1-187)||(3579089-3579275)
chr3 (59-158)||(3578998-3579093)
chr3 (78-187)||(3549296-3549405)
chr3 (141-187)||(3545609-3545655)
chr3 (9-70)||(3545531-3545592)
chr3 (78-135)||(3545573-3545630)
chr3 (97-153)||(3548883-3548939)
[»] chr4 (3 HSPs)
chr4 (105-153)||(5342215-5342263)
chr4 (77-153)||(25222705-25222781)
chr4 (96-176)||(25222463-25222543)
[»] chr8 (1 HSPs)
chr8 (77-147)||(38542464-38542534)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 3579089 - 3579275
Alignment:
Q  1 aaggaccgtgggatttatggtgaggtgatggagcgcgtgatggcgagtgacggtgaggggagggaccatgagagttgtggtgaggggatggagcttgtga 100  Q
    ||||||| || |||||||| | |||||||||||||  ||||||| ||||||||||||  |||||||||||||| |  |||||||||||||||||||||||    
T  3579089 aaggaccatgagatttatgataaggtgatggagcgaatgatggcaagtgacggtgagaagagggaccatgagattgatggtgaggggatggagcttgtga 3579188  T
Q  101 tggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcaggagcagatgatggtttgtgacgggttataaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  3579189 tggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgacgggaaggagcagatgatggtttgtgacgggttataaa 3579275  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 3578998 - 3579093
Alignment:
Q  59 ggagggaccatgagagttgtggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcagga 158  Q
    ||||||||||||||| | ||||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  3578998 ggagggaccatgagattggtggtgagggga----gcttgtgatggtgagtgatgagggtggtgaggggaatgagcaggagattggtggtgaggggaagga 3579093  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 3549296 - 3549405
Alignment:
Q  78 tggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcaggagcagatgatggtttgtgac 177  Q
    |||||| |||||||| | |||||||| ||||||||| ||||||||| |||||||||||||| | |||||||||||| | |||||||||||||||||||||    
T  3549296 tggtgatgggatggaccatgtgatggcgagtgatggtggtggtgagaggaatgagcaggaggtcggtggtgaggggaatgagcagatgatggtttgtgac 3549395  T
Q  178 gggttataaa 187  Q
    || |||||||    
T  3549396 ggcttataaa 3549405  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 3545609 - 3545655
Alignment:
Q  141 tggtggtgaggggcaggagcagatgatggtttgtgacgggttataaa 187  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  3545609 tggtggtgaggggaatgagcagatgatggtttgtgacgggttataaa 3545655  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 3545531 - 3545592
Alignment:
Q  9 tgggatttatggtgaggtgatggagcgcgtgatggcgagtgacggtgaggggagggaccatg 70  Q
    ||||||||||||||| | ||||||||| ||||||| |||||| ||||| |||||||||||||    
T  3545531 tgggatttatggtgatgagatggagcgggtgatggtgagtgatggtgatgggagggaccatg 3545592  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 3545573 - 3545630
Alignment:
Q  78 tggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcag 135  Q
    |||||| |||| ||| | |||||||| ||| ||||| |||||||||||||||||||||    
T  3545573 tggtgatgggagggaccatgtgatggcgagcgatggtggtggtgaggggaatgagcag 3545630  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 3548883 - 3548939
Alignment:
Q  97 gtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgagggg 153  Q
    ||||||||||||| ||| ||||| |||| ||| ||||| ||||||| ||||||||||    
T  3548883 gtgatggtgagtgctggtggtggcgaggagaaggagcatgagattgatggtgagggg 3548939  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 5342263 - 5342215
Alignment:
Q  105 gagtgatgggggtggtgaggggaatgagcaggagattggtggtgagggg 153  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  5342263 gagtgatggtggtggtgaggagaacgagcaggagattggtggtgagggg 5342215  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 25222781 - 25222705
Alignment:
Q  77 gtggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgagggg 153  Q
    |||||||||||| ||||   ||||||| ||||||||| |||||||||| ||| ||||  ||||||||||||||||||    
T  25222781 gtggtgaggggaaggagagggtgatggcgagtgatggtggtggtgaggagaaggagcgagagattggtggtgagggg 25222705  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 25222543 - 25222463
Alignment:
Q  96 tgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcaggagcagatgatggtttgtga 176  Q
    ||||||||||||||| || | |||||||||||| | ||  |||||| ||||||| ||| | |||||  |||||||||||||    
T  25222543 tgtgatggtgagtgaaggtgatggtgaggggaaggtgcgagagattcgtggtgaagggaatgagcatgtgatggtttgtga 25222463  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 38542464 - 38542534
Alignment:
Q  77 gtggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggt 147  Q
    ||||||| |||| |||||| ||||||||||||||  | ||||||||||||||   || |||||||||||||    
T  38542464 gtggtgacgggagggagctggtgatggtgagtgaaagtggtggtgaggggaagacgcgggagattggtggt 38542534  T

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