View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_high_8 (Length: 597)

Name: NF16123_high_8
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_high_8
NF16123_high_8
[»] scaffold0012 (2 HSPs)
scaffold0012 (321-589)||(243396-243664)
scaffold0012 (321-586)||(242484-242749)
[»] chr7 (6 HSPs)
chr7 (66-273)||(22986684-22986890)
chr7 (42-146)||(1536163-1536266)
chr7 (423-477)||(22061715-22061769)
chr7 (427-477)||(35128112-35128162)
chr7 (427-477)||(22060609-22060659)
chr7 (337-374)||(1884296-1884333)
[»] chr4 (9 HSPs)
chr4 (329-589)||(47606408-47606668)
chr4 (322-471)||(53757908-53758057)
chr4 (427-477)||(1273353-1273403)
chr4 (424-477)||(37559141-37559194)
chr4 (427-477)||(5688557-5688607)
chr4 (427-477)||(26788668-26788718)
chr4 (427-477)||(33377284-33377334)
chr4 (427-477)||(55953772-55953822)
chr4 (409-477)||(53757503-53757571)
[»] chr1 (10 HSPs)
chr1 (321-586)||(6709708-6709974)
chr1 (420-589)||(6710633-6710801)
chr1 (321-388)||(6710798-6710865)
chr1 (428-477)||(25786115-25786164)
chr1 (424-477)||(47411368-47411421)
chr1 (343-388)||(51424313-51424358)
chr1 (432-477)||(52181225-52181270)
chr1 (427-479)||(2971846-2971898)
chr1 (346-398)||(13568444-13568496)
chr1 (428-472)||(25787089-25787133)
[»] chr3 (15 HSPs)
chr3 (321-586)||(33149522-33149796)
chr3 (321-586)||(9769313-9769581)
chr3 (325-567)||(9776900-9777144)
chr3 (331-576)||(382005-382252)
chr3 (323-477)||(382891-383045)
chr3 (321-567)||(29822582-29822831)
chr3 (321-477)||(29821357-29821511)
chr3 (33-79)||(10995856-10995902)
chr3 (424-472)||(42632849-42632897)
chr3 (427-477)||(47808027-47808077)
chr3 (427-477)||(51825541-51825591)
chr3 (424-477)||(42633806-42633859)
chr3 (427-511)||(12060785-12060868)
chr3 (23-71)||(14243183-14243231)
chr3 (424-476)||(41387354-41387406)
[»] chr5 (8 HSPs)
chr5 (16-241)||(12411674-12411898)
chr5 (329-488)||(11431374-11431533)
chr5 (57-146)||(22126861-22126949)
chr5 (343-398)||(5061090-5061145)
chr5 (343-398)||(5062185-5062240)
chr5 (84-134)||(25251656-25251706)
chr5 (84-134)||(25315441-25315491)
chr5 (427-476)||(10085766-10085815)
[»] chr6 (9 HSPs)
chr6 (330-567)||(28930940-28931181)
chr6 (321-477)||(28928395-28928551)
chr6 (329-586)||(9754128-9754388)
chr6 (321-474)||(4030786-4030939)
chr6 (321-511)||(4030187-4030378)
chr6 (321-567)||(24546893-24547141)
chr6 (26-146)||(22458544-22458663)
chr6 (321-399)||(17360087-17360165)
chr6 (427-479)||(16269535-16269587)
[»] chr2 (6 HSPs)
chr2 (321-506)||(18342779-18342965)
chr2 (330-477)||(15269012-15269159)
chr2 (36-154)||(32136365-32136482)
chr2 (66-152)||(15497284-15497369)
chr2 (343-398)||(5564121-5564176)
chr2 (331-398)||(15268431-15268498)
[»] scaffold1127 (1 HSPs)
scaffold1127 (26-146)||(2374-2493)
[»] scaffold1024 (1 HSPs)
scaffold1024 (33-142)||(706-814)
[»] chr8 (5 HSPs)
chr8 (427-477)||(3237563-3237613)
chr8 (428-477)||(27750541-27750590)
chr8 (428-477)||(38589967-38590016)
chr8 (323-367)||(21553738-21553782)
chr8 (428-472)||(38590937-38590981)
[»] scaffold0996 (1 HSPs)
scaffold0996 (57-146)||(2416-2504)
[»] scaffold1550 (1 HSPs)
scaffold1550 (323-378)||(198-253)


Alignment Details
Target: scaffold0012 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 321 - 589
Target Start/End: Complemental strand, 243664 - 243396
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||       ||||||| ||||||    
T  243664 aatggtcccataactctaaaacgtctcaatttggtcccttatctttatttccgtcaatcaagttagtcatttccgttagtttttttgctaaaatcgttaa 243565  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaatagacttgcaacatatgatcatttataatcttt 520  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  243564 gtcttgccacgtgtcacttaggattagtgatcaaggattggatttaaaaagcacacaaaatttacgatagactcacaacatatgatcatttataatcttt 243465  T
Q  521 ccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcatatc 589  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  243464 ccctgtttgtcttgaatttcctaaaattaaaaattaccaacaatcttcatcttcttccctcttcatatc 243396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 321 - 586
Target Start/End: Original strand, 242484 - 242749
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||       |||||||| |||||    
T  242484 aatggtctcataactctaaaacgtctcaatttggtcccttatctttatttccgtcaatcaagttagtcctttctgttagtttttttgctaaaactgttaa 242583  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaatagacttgcaacatatgatcatttataatcttt 520  Q
    ||||||||| ||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  242584 gtcttgccatgtgtcacttagaattggtgatcaagggtttgatttgaaaagcacacaaaatttacaatggactcacaacatatgatcatttataatcttt 242683  T
Q  521 ccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcat 586  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||||    
T  242684 ccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatctttttccctcttcat 242749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 66 - 273
Target Start/End: Complemental strand, 22986890 - 22986684
Alignment:
Q  66 gcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacacatgggcatgtgtgtttcattgtgtctga 165  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  22986890 gcactagcaatttctct-gagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacacattggcatgtgtgtttcgttgtgtctga 22986792  T
Q  166 gcattaaagtctttagcccactcaaagagtcgtagaacaccaggtttcaaattcacggtgtctgatgcccagacagaacgtaaatcaatttatgaagtaa 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22986791 gcattaaagtctttagcccactcaaagagtcgtagaacaccaggtttcaaattcacggtgtctgatgcccagacagaacgtaaatcaatttctgaagtaa 22986692  T
Q  266 aaaagaat 273  Q
    ||||||||    
T  22986691 aaaagaat 22986684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 1536266 - 1536163
Alignment:
Q  42 tcaataatcaatggcgtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacacatgg 141  Q
    |||||||| | ||| ||||| ||||||||||||||||||| | || ||||| ||||||||||| |||||||| | ||||||||||||||||||||| ||     
T  1536266 tcaataatgagtggtgtgcccacggcactagcaatttctcgt-agcgtcctatccatccagtactcttgtggaaattccatcaaacgaatccacacttga 1536168  T
Q  142 gcatg 146  Q
    |||||    
T  1536167 gcatg 1536163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 22061769 - 22061715
Alignment:
Q  423 cttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||||||| ||| |||||| ||||||  |||||||||||||||||||||    
T  22061769 cttgccacgtgtcatttaagattggggatcaacggttggatttaaaaagcacaca 22061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 35128162 - 35128112
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  35128162 ccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 35128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 22060609 - 22060659
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||| |||| ||| |||||||||||||  |||||||||||||||||||||    
T  22060609 ccacgagtcatttaagattggtgatcaacggttggatttaaaaagcacaca 22060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 1884296 - 1884333
Alignment:
Q  337 taaaacgtctcaatttggtcccttatctttatttccgt 374  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  1884296 taaaatgtctcaatttggtcccttatctttacttccgt 1884333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 7e-97; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 329 - 589
Target Start/End: Complemental strand, 47606668 - 47606408
Alignment:
Q  329 cataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagtcttgcc 428  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| | | ||||||||| ||||||||||       |||||||||||||| |||||||    
T  47606668 cataactctaaaacgtctcaatttggtctattatctttatttccgtcattcaagttagtcttttccgttagtttttttgctaaaaccgttaaatcttgcc 47606569  T
Q  429 acgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaatagacttgcaacatatgatcatttataatctttccctattt 528  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||  |||    
T  47606568 acgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaaaatttacaataaactcacaacatatgatcatttataatctttccccgttt 47606469  T
Q  529 gtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcatatc 589  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47606468 gtcttgaatttcctaaaattaaaaatcaccaacaatcttcatcttcttccctcttcatatc 47606408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 322 - 471
Target Start/End: Complemental strand, 53758057 - 53757908
Alignment:
Q  322 atggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaag 421  Q
    |||||| ||||| | |||||||||||||||||||||||||| | ||||||||||||| || ||| || | | ||||||       | ||||||||||||     
T  53758057 atggtctcataattttaaaacgtctcaatttggtcccttatttctatttccgttaatcaatttaatcctct-cgttagctttttcgttaaaaccgttaac 53757959  T
Q  422 tcttgccacgtgtcacttaggattggtgatc-aagagttggatttaaaaag 471  Q
    ||||| ||||||||| ||| ||||| ||||| ||| |||||||||||||||    
T  53757958 tcttggcacgtgtcatttaagattgatgatcaaagggttggatttaaaaag 53757908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 1273403 - 1273353
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  1273403 ccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 1273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 37559141 - 37559194
Alignment:
Q  424 ttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||||| |||||||||  ||||||||||||  |||||||||||||||||||||    
T  37559141 ttgccacatgtcacttaaaattggtgatcaacggttggatttaaaaagcacaca 37559194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 5688607 - 5688557
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||||||| ||||| |||||||  |||||||||| ||||||||||    
T  5688607 ccacgtgtcacttaagattgatgatcaacggttggatttataaagcacaca 5688557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 26788668 - 26788718
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| |||||||||||||  |||| ||||||||||||||||    
T  26788668 ccacgtgtcagttaagattggtgatcaacggttgaatttaaaaagcacaca 26788718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 33377334 - 33377284
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||  ||| |||||||||||||  |||||||||||||||||||||    
T  33377334 ccacgtgtcgtttaagattggtgatcaacggttggatttaaaaagcacaca 33377284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 55953822 - 55953772
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| |||||||||||||  |||| ||||||||||||||||    
T  55953822 ccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 55953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 477
Target Start/End: Original strand, 53757503 - 53757571
Alignment:
Q  409 taaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||| |||||||||||||||||  |||| ||| ||||| | |||||  ||||||| |||||||||||||    
T  53757503 taaatccgttaagtcttgccacaagtcatttaagattgataatcaaaggttggatctaaaaagcacaca 53757571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 6e-91; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 321 - 586
Target Start/End: Original strand, 6709708 - 6709974
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnn-gctaaaaccgtta 419  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||        |||||||| ||||    
T  6709708 aatggtcctataactctaaaacgtctcaatttggtcccttatctttatttcggtcaatcaagttagtcctttccgttagttttttttgctaaaactgtta 6709807  T
Q  420 agtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaatagacttgcaacatatgatcatttataatctt 519  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  6709808 agtcttgccacgtgtcacttaggattggtgatcaagggtttgatttgaaaaacacacaaaatttacaatggactcacaacatatgatcatttataatctt 6709907  T
Q  520 tccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcat 586  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  6709908 tccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatcttcttccctcttcat 6709974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 420 - 589
Target Start/End: Complemental strand, 6710801 - 6710633
Alignment:
Q  420 agtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaatagacttgcaacatatgatcatttataatctt 519  Q
    ||||||||||| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  6710801 agtcttgccacatgtcacttagaattggtgatcaagggttgaatttaaaaagcacacaaaatttacgatagactcacaacatatgatcatttataatctt 6710702  T
Q  520 tccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcatatc 589  Q
    | | | ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  6710701 t-cgtgtttgtcttgaatttcctaaaattaaaaattaccaacaatcttcatcttcttccctcttcatatc 6710633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 6710865 - 6710798
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtc 388  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||    
T  6710865 aatggtcccataactctaaaacgtctcaatttgatcccttatctttattttcgtcaatcaagttagtc 6710798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 25786115 - 25786164
Alignment:
Q  428 cacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  25786115 cacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 25786164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 47411421 - 47411368
Alignment:
Q  424 ttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||||| ||||| ||| |||||||||||||  |||| ||||||||||||||||    
T  47411421 ttgccacatgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 47411368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 51424313 - 51424358
Alignment:
Q  343 gtctcaatttggtcccttatctttatttccgttaattaagttagtc 388  Q
    |||||||||||||| |||||||||| |||||||||| || ||||||    
T  51424313 gtctcaatttggtctcttatctttacttccgttaatcaaattagtc 51424358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 52181270 - 52181225
Alignment:
Q  432 tgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||| ||| |||||||||||||  |||||||||||||||||||||    
T  52181270 tgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 52181225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 2971846 - 2971898
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaa 479  Q
    |||||||||| ||| |||||| ||||||| | |||||||| ||||||||||||    
T  2971846 ccacgtgtcatttaagattggcgatcaagggctggatttagaaagcacacaaa 2971898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 13568496 - 13568444
Alignment:
Q  346 tcaatttggtcccttatctttatttccgttaattaagttagtcatttccgtta 398  Q
    ||||||||||| |||||||||| |||||  |||||| |||||||| |||||||    
T  13568496 tcaatttggtctcttatctttacttccgccaattaaattagtcatctccgtta 13568444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 25787133 - 25787089
Alignment:
Q  428 cacgtgtcacttaggattggtgatcaagagttggatttaaaaagc 472  Q
    ||||||||| ||| |||||||||||||  ||||||||||||||||    
T  25787133 cacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 25787089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 321 - 586
Target Start/End: Original strand, 33149522 - 33149796
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||| || |||||||||| ||||||||| | ||||||||       | ||||||||||||    
T  33149522 aatggtcccataactttaaaacgtctcaatttggtccattatctctacttccgttaatcaagttagtcctctccgttagtttttttgttaaaaccgttaa 33149621  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca-aaatttacaatagacttgcaacatatgatcattt-ataatct 518  Q
      |||||||||||||||||| |||| ||||||||| ||| |||||||||||| |||| | || || ||| |||| |||||||||||| |||| || ||||    
T  33149622 cccttgccacgtgtcacttaagatttgtgatcaagggttagatttaaaaagcgcacacacatatataatggactagcaacatatgataatttaattatct 33149721  T
Q  519 ttccctatttgtcttgaatttccta-------aaattaaaaatcaccaacaatcttggtcttcttccctcttcat 586  Q
    |||| |||||||||| |||||||||       ||||||||||| ||||| ||||||  |||||||||||||||||    
T  33149722 ttccttatttgtcttaaatttcctaaaactacaaattaaaaattaccaataatcttcatcttcttccctcttcat 33149796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 321 - 586
Target Start/End: Complemental strand, 9769581 - 9769313
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| |||||||||| |||||| ||||||| || || ||| || ||| ||||||||| | |||||||        |||||||| |||||    
T  9769581 aatggtcccataactttaaaacgtcttaatttgatcccttaactctacttcagtcaatcaagttagtcctctccgttaatgtttttgctaaaactgttaa 9769482  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaa-tttacaatagacttgcaacatatgatcatttata--atc 517  Q
      || |||||||||||||||||||||||||| |   ||||||||| |||| || |||||| |||||||| ||||  ||||||||||| |||||||  |||    
T  9769481 cactcgccacgtgtcacttaggattggtgatgagaggttggatttgaaaaccagacaaaaatttacaattgactcacaacatatgataatttatattatc 9769382  T
Q  518 tttccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcat 586  Q
    ||||  ||||| ||||||||||| ||||||||||||| |||||||| |||  |||||||||||||||||    
T  9769381 tttctttatttatcttgaatttcttaaaattaaaaattaccaacaaacttcatcttcttccctcttcat 9769313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 325 - 567
Target Start/End: Original strand, 9776900 - 9777144
Alignment:
Q  325 gtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagtct 424  Q
    |||||||||||  ||||||||||||||||||||||||||| || ||| || ||| ||||||||| | |  |||||       |||| | | |||||  ||    
T  9776900 gtcacataacttgaaaacgtctcaatttggtcccttatctctacttctgtcaatcaagttagtcctctgtgttagtttttttgctacatctgttaaccct 9776999  T
Q  425 tgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca-aaatttacaatagacttgcaacatatgatcatttata--atctttc 521  Q
    |||||| ||||| ||||||||| |||||||  ||||||||| ||| ||||||| ||||||||||| || |  ||||||||||| |||||||  |||||||    
T  9777000 tgccacatgtcatttaggattgttgatcaaaggttggatttgaaa-gcacacacaaatttacaatggattcacaacatatgataatttatattatctttc 9777098  T
Q  522 cctatttgtcttgaatttcctaaaattaaaaatcaccaacaatctt 567  Q
     || |||||||| |||||||||||||||||||||||||||||||||    
T  9777099 tctgtttgtcttaaatttcctaaaattaaaaatcaccaacaatctt 9777144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 331 - 576
Target Start/End: Original strand, 382005 - 382252
Alignment:
Q  331 taactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagtcttgccac 430  Q
    ||||| ||| || ||||||||||||||||||||| || |||||| ||| |||||||||||||||||||         | ||| |||||||    ||||||    
T  382005 taactataatacatctcaatttggtcccttatctctacttccgtcaatcaagttagtcatttccgttaatttttttacaaaatccgttaacctatgccac 382104  T
Q  431 gtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatt-tacaatagacttgcaacatatgatcatttata--atctttccctatt 527  Q
     ||||| ||  |||||||||||||| | || |||| ||||||||||| ||   ||||||||||| |||||||||||| |||| ||  ||| || ||| ||    
T  382105 atgtcatttgtgattggtgatcaagggctgaattttaaaagcacacacaaggatacaatagactcgcaacatatgataatttttattatcatttcct-tt 382203  T
Q  528 tgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttctt 576  Q
    ||||||||||||| ||||||||||||||| ||||||||||  |||||||    
T  382204 tgtcttgaatttcttaaaattaaaaatcatcaacaatcttcatcttctt 382252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 323 - 477
Target Start/End: Complemental strand, 383045 - 382891
Alignment:
Q  323 tggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagt 422  Q
    ||||| ||||||| |||||| ||||||||||||||||||||| || |||||| ||| ||||||||| | ||||||||        | |||||||||||      
T  383045 tggtcccataactataaaacatctcaatttggtcccttatctctacttccgtcaatcaagttagtcctctccgttagtttttttacaaaaaccgttaaca 382946  T
Q  423 cttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||||||| ||| |||||||||||||| |||  |||| |||||||||||    
T  382945 cttgccacgtgtcatttatgattggtgatcaagggttaaatttgaaaagcacaca 382891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 567
Target Start/End: Complemental strand, 29822831 - 29822582
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||| | ||||| |||||||||||||||||||| | || ||| |||||| || |||||| | |||||||        | ||||||||||||    
T  29822831 aatggtcccataattttaaaaagtctcaatttggtcccttatttatacttctgttaatcaaattagtcctctccgttaacttttttgttaaaaccgttaa 29822732  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca-aaatttacaatagacttgcaacatatgatcatttata--atc 517  Q
     ||||||||| ||||||||| ||||| | || ||  |||||||||||||||||| || |||| |||||||||||      ||||||| |||||||  ||     
T  29822731 ctcttgccacatgtcacttaagattgattatgaatggttggatttaaaaagcactcacaaatatacaatagactcaatgtatatgataatttatattata 29822632  T
Q  518 tttccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatctt 567  Q
    ||| | |||||||||| |||||| |||||||||||||||| || ||||||    
T  29822631 tttacttatttgtctttaatttcttaaaattaaaaatcacaaataatctt 29822582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 477
Target Start/End: Original strand, 29821357 - 29821511
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| ||||  ||  ||||| ||||||||| | |||||||        | ||||||||||||    
T  29821357 aatggtcccataactttaaaacgtctcaatttggtcctttatttttacctc--ttaatcaagttagtcctctccgttaagttttttgttaaaaccgttaa 29821454  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
     |||||| |||||||||||| ||||| | |||||   || |||||||||||||||||    
T  29821455 ctcttgctacgtgtcacttaagattgataatcaatgattagatttaaaaagcacaca 29821511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 10995902 - 10995856
Alignment:
Q  33 gtcgcattgtcaataatcaatggcgtgccgacggcactagcaatttc 79  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||    
T  10995902 gtcgcattatcaataatcaatggggtgcctacggcactagcaatttc 10995856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 42632849 - 42632897
Alignment:
Q  424 ttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagc 472  Q
    ||||||||||||| ||| |||||||||||||  ||||||||||||||||    
T  42632849 ttgccacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 42632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 47808077 - 47808027
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| ||| |||||||||  |||||||||||||||||||||    
T  47808077 ccacgtgtcagttaagatcggtgatcaacggttggatttaaaaagcacaca 47808027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 51825591 - 51825541
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| |||||||||||||  |||| ||||||||||||||||    
T  51825591 ccacgtgtcagttaagattggtgatcaatggttgaatttaaaaagcacaca 51825541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 42633859 - 42633806
Alignment:
Q  424 ttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||||| ||||| ||| ||||||| |||||  |||||||||||||||||||||    
T  42633859 ttgccacatgtcatttaagattggtaatcaacggttggatttaaaaagcacaca 42633806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 511
Target Start/End: Original strand, 12060785 - 12060868
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaatagacttgcaacatatgatcattt 511  Q
    |||| ||||||||| |||||||||||||  | || ||||| ||||||| | |||| ||||||| ||| |||||| ||||||||||    
T  12060785 ccacatgtcacttaagattggtgatcaatggctgaatttagaaagcacgc-aaatatacaataaactcgcaacagatgatcattt 12060868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 14243183 - 14243231
Alignment:
Q  23 gcgcttggaagtcgcattgtcaataatcaatggcgtgccgacggcacta 71  Q
    ||||||||  |||||||| |||||||||||||| ||||| |||||||||    
T  14243183 gcgcttggttgtcgcattatcaataatcaatggggtgcctacggcacta 14243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 41387406 - 41387354
Alignment:
Q  424 ttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacac 476  Q
    ||||||| ||||| |||  ||||||||||||  ||||||||||||||||||||    
T  41387406 ttgccacatgtcatttaaaattggtgatcaacggttggatttaaaaagcacac 41387354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 12411898 - 12411674
Alignment:
Q  16 caaagaggcgcttggaagtcgcattgtcaataatcaatggcgtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggta 115  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| |||| ||| ||||||||||||| ||| |||||| |||||||||||  |||||||||    
T  12411898 caaagagacgcttggaagtcgcattgtcaataatcaacgacgtaccgatggcgctagcaatttctc-tgatagtcctttccatccagta--cttgtggta 12411802  T
Q  116 tttccatcaaacgaatccacacatgggcatgtgtgtttcattgtgtctgagcattaaagtctttagcccactcaaagagtcgtagaacaccaggtttcaa 215  Q
     |||||||||||  |||||||  || |||||||| || |  ||| | | ||||||||| || ||||| || ||||||||||||||||| || || |||||    
T  12411801 attccatcaaacatatccacatctgagcatgtgtattcctctgtttattagcattaaattccttagctcattcaaagagtcgtagaacccctggcttcaa 12411702  T
Q  216 attcacggtgt--ctgatgcccagacag 241  Q
    |||||||||||  |||||| ||||||||    
T  12411701 attcacggtgtgcctgatgaccagacag 12411674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 11431533 - 11431374
Alignment:
Q  329 cataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagtcttgcc 428  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| |||| |||       | |||||| |||||||||||||    
T  11431533 cataactataaaacgtcacaatttggtcctttatctttatttctgttaatcaagttagtcatctccgctagtttttttgttaaaactgttaagtcttgcc 11431434  T
Q  429 acgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatttacaat 488  Q
    || |||||||||||||||||||| ||  |||||||||||||||| |||| | ||||||||    
T  11431433 acatgtcacttaggattggtgattaatggttggatttaaaaagcgcacagagtttacaat 11431374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 22126949 - 22126861
Alignment:
Q  57 gtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacacatgggcatg 146  Q
    ||||| ||||||| ||||||||||||| |  ||||| ||||||||||| |||||||| | ||||||||||||||||||||| || |||||    
T  22126949 gtgcccacggcacaagcaatttctcttaac-gtcctatccatccagtactcttgtggcaattccatcaaacgaatccacacttgagcatg 22126861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 5061090 - 5061145
Alignment:
Q  343 gtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgtta 398  Q
    ||||||||||||||||||||||||| |||||| ||| || |||||| | |||||||    
T  5061090 gtctcaatttggtcccttatctttaattccgtcaatcaaattagtcctctccgtta 5061145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 5062240 - 5062185
Alignment:
Q  343 gtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgtta 398  Q
    ||||||||||||||||||||||||| |||||| ||| || |||||| | |||||||    
T  5062240 gtctcaatttggtcccttatctttaattccgtcaatcaaattagtcctctccgtta 5062185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 25251656 - 25251706
Alignment:
Q  84 gagagtcctctccatccagtattcttgtggtatttccatcaaacgaatcca 134  Q
    ||||||||| ||||||||||| ||||| |||| |||||| |||||||||||    
T  25251656 gagagtcctatccatccagtactcttgcggtaattccattaaacgaatcca 25251706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 25315441 - 25315491
Alignment:
Q  84 gagagtcctctccatccagtattcttgtggtatttccatcaaacgaatcca 134  Q
    ||||||||| ||||||||||| ||||| |||| |||||| |||||||||||    
T  25315441 gagagtcctatccatccagtactcttgcggtaattccattaaacgaatcca 25315491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 10085815 - 10085766
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacac 476  Q
    |||||||||| ||| ||||| ||||||| | |||||||||||||||||||    
T  10085815 ccacgtgtcagttaagattgatgatcaacaattggatttaaaaagcacac 10085766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 330 - 567
Target Start/End: Complemental strand, 28931181 - 28930940
Alignment:
Q  330 ataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnn-gctaaaaccgttaagtcttgcc 428  Q
    |||||| |||||||||||||||||||||||||| | || |||||||||| || |||||| | ||||||||        | ||||||||  || |||||||    
T  28931181 ataactttaaaacgtctcaatttggtcccttatttctacttccgttaatcaacttagtcctctccgttagctttttttgttaaaaccgccaactcttgcc 28931082  T
Q  429 acgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca-aaatttacaatagacttgcaacatatgatcatttata--atctttcccta 525  Q
    || ||||||||| ||||| |||||||| |||||||||||||||||| || |||| ||||||  |||| ||  ||||||| |||||||  || ||||  ||    
T  28931081 acatgtcacttaagattgatgatcaagggttggatttaaaaagcactcacaaatatacaatgaacttacagtatatgataatttatattatatttcatta 28930982  T
Q  526 tttgtcttgaatttcctaaaattaaaaatcaccaacaatctt 567  Q
    |||||||| |||||| |||||||||||||||| || ||||||    
T  28930981 tttgtctttaatttcttaaaattaaaaatcacaaaaaatctt 28930940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 321 - 477
Target Start/End: Original strand, 28928395 - 28928551
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    |||||||  |||||| |||||||||||||||||||||||||| | || ||| |||||| ||||||||| ||| ||||||       | ||||||||||||    
T  28928395 aatggtcctataactttaaaacgtctcaatttggtcccttatttctacttctgttaatcaagttagtccttttcgttagcttttttgttaaaaccgttaa 28928494  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| | ||||||| ||||| | |||||| ||||||| |||||||||||||    
T  28928495 gtcttgccacatatcacttaagattgataatcaagggttggatctaaaaagcacaca 28928551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 329 - 586
Target Start/End: Complemental strand, 9754388 - 9754128
Alignment:
Q  329 cataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagtcttgcc 428  Q
    ||||||| |||||||||||||||| |||||||| ||  || | ||| ||| || |||||| | |||||||        |||||||| |||||   |||||    
T  9754388 cataactttaaaacgtctcaatttagtcccttaactccatgttcgtcaatcaatttagtcttctccgttaatttttttgctaaaactgttaacctttgcc 9754289  T
Q  429 acgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaaatt-tacaatagacttgcaacatatgatcatttata--atctttcccta 525  Q
    || |||||||||||||||||||||||| |||| ||||  ||||| ||||  | | ||||||||| |  ||  ||||||| |||||||  ||||||   ||    
T  9754288 acatgtcacttaggattggtgatcaagggttgaatttgtaaagctcacacgagtatacaatagattcacagtatatgataatttatattatcttttttta 9754189  T
Q  526 tttgtcttgaatttcctaaaattaaaaatcaccaacaatcttggtcttcttccctcttcat 586  Q
    ||||||| ||||||||||||||||||||||||||| |||||    ||||||||||||||||    
T  9754188 tttgtctcgaatttcctaaaattaaaaatcaccaataatctccaccttcttccctcttcat 9754128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 321 - 474
Target Start/End: Complemental strand, 4030939 - 4030786
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| |||||||||||||||||||||||||| | || ||| |||||| || |||||| | |||||||        | ||||||||||||    
T  4030939 aatggtctcataactttaaaacgtctcaatttggtcccttatttatacttctgttaatcaaattagtcctctccgttaacttttttgttaaaaccgttaa 4030840  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcac 474  Q
     |||| |||| ||||||||| ||||| | || ||  ||||||||||||||||||    
T  4030839 ctcttaccacatgtcacttaagattgattatgaatggttggatttaaaaagcac 4030786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 511
Target Start/End: Original strand, 4030187 - 4030378
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| ||||||||||||||||||||  |||| ||||  || |||||| ||||||||| | ||| |||        | |||||| |||||    
T  4030187 aatggtcccataactttaaaacgtctcaatttggtcatttatttttacctctgttaatcaagttagtcctctccattaagttttttgttaaaactgttaa 4030286  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca-aaatttacaatagacttgcaacatatgatcattt 511  Q
     |||||||||||||||||||  |||| | |||||  | |||||||||||||||||||  | | |||||| |||||||||||| |||| ||||    
T  4030287 ctcttgccacgtgtcacttaaaattgataatcaatggatggatttaaaaagcacacactagtctacaatggacttgcaacatttgataattt 4030378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 567
Target Start/End: Complemental strand, 24547141 - 24546893
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| ||||||||||||||||| |||||||| | || ||  |||||| || |||||| | |||||||        |  |||||||||||    
T  24547141 aatggtctcataactttaaaacgtctcaatttgatcccttatttatactt-tgttaatcaaattagtcctctccgttaacttttttgtcaaaaccgttaa 24547043  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca-aaatttacaatagacttgcaacatatgatcatt--tataatc 517  Q
     | ||||||| ||||||||| ||||| | |||||  ||||||||||| |||||| || |||| |||||| ||||    | ||||||| |||  ||| ||     
T  24547042 ctgttgccacatgtcacttaagattgataatcaatggttggatttaataagcactcacaaatatacaatggactcaatatatatgataatttctattata 24546943  T
Q  518 tttccctatttgtcttgaatttcctaaaattaaaaatcaccaacaatctt 567  Q
    ||||| ||||| |||| |||||| |||||||||||||||| || ||||||    
T  24546942 tttccttatttttctttaatttcttaaaattaaaaatcacaaataatctt 24546893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 22458663 - 22458544
Alignment:
Q  26 cttggaagtcgcattgtcaataatcaatggcgtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaa 125  Q
    |||||| || ||||| |||||||| |  || ||||| |||||||||| |||||||||| |  ||||| |||||| |||| |||||||| | |||||||||    
T  22458663 cttggatgttgcattatcaataatgagcggtgtgcccacggcactagaaatttctcttaac-gtcctatccatctagtactcttgtggcaattccatcaa 22458565  T
Q  126 acgaatccacacatgggcatg 146  Q
    |||||||||||| || |||||    
T  22458564 acgaatccacacttgagcatg 22458544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 17360165 - 17360087
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttag 399  Q
    |||| ||| |||||| |||||||||| ||||| |||| ||||||   ||| ||| ||||||||||||| ||||||||||    
T  17360165 aatgatcatataactataaaacgtctaaatttagtccattatctccgttttcgtcaattaagttagtcctttccgttag 17360087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 16269587 - 16269535
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacacaaa 479  Q
    |||||||| | ||| |||||||||||||| |||||||||| ||||| ||||||    
T  16269587 ccacgtgtaatttaagattggtgatcaagggttggatttagaaagcgcacaaa 16269535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 321 - 506
Target Start/End: Original strand, 18342779 - 18342965
Alignment:
Q  321 aatggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaa 420  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| | || |||||||||| ||||||||| | |||||||        |||||||| |||||    
T  18342779 aatggtcccataactttaaaacgtctcaatttggtcctttatttctagttccgttaatcaagttagtcctctccgttaattttattgctaaaactgttaa 18342878  T
Q  421 gtcttgccacgtgtcacttaggattggtgatcaagagttggattt-aaaaagcacacaaaatttacaatagacttgcaacatatgat 506  Q
      ||||||| ||||||||| |||||| |||| ||  ||||||||| |||||||||||| |||||| ||| ||||  |||||||||||    
T  18342879 cccttgccatgtgtcacttgggattgatgattaaaggttggatttaaaaaagcacacacaatttagaatggactctcaacatatgat 18342965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 477
Target Start/End: Complemental strand, 15269159 - 15269012
Alignment:
Q  330 ataactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgttagnnnnnnngctaaaaccgttaagtcttgcca 429  Q
    |||||| |||||||||||||||||||||||||||| || |||||| ||| ||||||||| | |||||||         | ||||||||||| ||||||||    
T  15269159 ataactataaaacgtctcaatttggtcccttatctatacttccgtcaatcaagttagtcctctccgttaatttttttacaaaaaccgttaactcttgcca 15269060  T
Q  430 cgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    | ||||| ||| |||||||||||||| ||| ||||| |||||||||||    
T  15269059 catgtcatttatgattggtgatcaagggttagatttgaaaagcacaca 15269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 32136365 - 32136482
Alignment:
Q  36 gcattgtcaataatcaatggcgtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccac 135  Q
    |||||||||||||| | ||| ||||| | ||| |||| |||||||| | | |||||| |||||||||||||||||||||| ||||||||  |||||||||    
T  32136365 gcattgtcaataataagtggtgtgccaatggcgctagaaatttctcgtaa-agtcctatccatccagtattcttgtggtaattccatcaggcgaatccac 32136463  T
Q  136 acatgggcatgtgtgtttc 154  Q
    || || ||||| |||||||    
T  32136464 acttgagcatgagtgtttc 32136482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 15497369 - 15497284
Alignment:
Q  66 gcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacacatgggcatgtgtgtt 152  Q
    |||||||||||||||||| |  ||||| |||||||| || |||||||| | ||||||||||||||||||||| || ||||| |||||    
T  15497369 gcactagcaatttctcttaac-gtcctatccatccaatactcttgtggcaattccatcaaacgaatccacacttgagcatgagtgtt 15497284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 5564121 - 5564176
Alignment:
Q  343 gtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgtta 398  Q
    ||||||||||||||||||||||||| |||||| ||| || |||||||| |||||||    
T  5564121 gtctcaatttggtcccttatctttacttccgtcaatcaaattagtcatctccgtta 5564176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 15268431 - 15268498
Alignment:
Q  331 taactctaaaacgtctcaatttggtcccttatctttatttccgttaattaagttagtcatttccgtta 398  Q
    ||||| ||||| |||||||||||||||||||||| || ||| || ||| ||||||||| |||||||||    
T  15268431 taactataaaatgtctcaatttggtcccttatctctacttctgtcaatcaagttagtcctttccgtta 15268498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 2493 - 2374
Alignment:
Q  26 cttggaagtcgcattgtcaataatcaatggcgtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaa 125  Q
    |||||| || ||||| |||||||| |  || ||||| ||||||||||||||||||||| |  ||||| ||||||||||| |||||||| | |||||||||    
T  2493 cttggacgttgcattatcaataatgagcggtgtgcccacggcactagcaatttctcttaac-gtcctatccatccagtactcttgtggcaattccatcaa 2395  T
Q  126 acgaatccacacatgggcatg 146  Q
    |||||||||||| || |||||    
T  2394 acgaatccacacttgagcatg 2374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 814 - 706
Alignment:
Q  33 gtcgcattgtcaataatcaatggcgtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatc 132  Q
    |||||||| ||||||| || ||| ||||| ||||||||||||||||| || ||||||||| |||||||| || || ||||| | ||||||||| ||||||    
T  814 gtcgcattatcaataagcagtggtgtgcccacggcactagcaatttccct-gagagtcctgtccatccaatactcctgtgggagttccatcaatcgaatc 716  T
Q  133 cacacatggg 142  Q
    ||||| ||||    
T  715 cacacctggg 706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 3237563 - 3237613
Alignment:
Q  427 ccacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  3237563 ccacgtgtcagttaagattggtgatcaacagttggatttaaaaagcacaca 3237613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 27750590 - 27750541
Alignment:
Q  428 cacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  27750590 cacgtgtcagttaagattggtgatcaacggttggatttaaaaagcacaca 27750541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 38589967 - 38590016
Alignment:
Q  428 cacgtgtcacttaggattggtgatcaagagttggatttaaaaagcacaca 477  Q
    ||||||||| ||| |||||||||||||  |||| ||||||||||||||||    
T  38589967 cacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 38590016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 21553782 - 21553738
Alignment:
Q  323 tggtcacataactctaaaacgtctcaatttggtcccttatcttta 367  Q
    ||||| ||||||| |||| ||||||||||||||||| ||||||||    
T  21553782 tggtcccataactttaaatcgtctcaatttggtcccatatcttta 21553738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 38590981 - 38590937
Alignment:
Q  428 cacgtgtcacttaggattggtgatcaagagttggatttaaaaagc 472  Q
    ||||||||| ||| ||||||||||||| ||||| |||||||||||    
T  38590981 cacgtgtcatttaagattggtgatcaacagttgaatttaaaaagc 38590937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 2504 - 2416
Alignment:
Q  57 gtgccgacggcactagcaatttctcttgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacacatgggcatg 146  Q
    ||||| || |||||||| ||||||||| |  ||||| |||||||||||||||||||| | ||||||||| ||||||||||| || |||||    
T  2504 gtgcccactgcactagcgatttctcttaac-gtcctatccatccagtattcttgtggcaattccatcaagcgaatccacacttgagcatg 2416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1550 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1550
Description:

Target: scaffold1550; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 198 - 253
Alignment:
Q  323 tggtcacataactctaaaacgtctcaatttggtcccttatctttatttccgttaat 378  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |  ||||||||||    
T  198 tggtctcataactataaaacgtctcaatttggtcccttatctattcttccgttaat 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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