View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_1 (Length: 1015)
Name: NF16123_low_1
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 894; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 894; E-Value: 0
Query Start/End: Original strand, 4 - 1005
Target Start/End: Original strand, 53561548 - 53562557
Alignment:
| Q |
4 |
ggaatgttggcaacgggagggttacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561548 |
ggaatgttggcaacgggagggttacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaa |
53561647 |
T |
|
| Q |
104 |
ccaaaaagagggttttattggggactgtcgggtgagtggcagggtgggaggtaattgggattttagttggagaagggatctttt-gtgtgggaggaggat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53561648 |
ccaaaaagagggttttattggggactgtcgggtgagtggcggggtgggaggtaattgggattttagttggagaagggatctttttgtgtgggaggaggat |
53561747 |
T |
|
| Q |
203 |
cttgttgatgcaatgttggaggatttgaatggttttgtgttttcggatgttgaagacgattggcgttggagtttggaagaggacggtactttttcggtta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561748 |
cttgttgatgcaatgttggaggatttgaatggttttgtgttttcggatgttgaagacgattggcgttggagtttggaagaggacggtactttttcggtta |
53561847 |
T |
|
| Q |
303 |
aatctatgtattccaaattggaaacattgatggtgagggaagagagccttcatgaactagagaggagggtgtttaagcatatttggaagagtccggcg-c |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53561848 |
aatctatgtattccaaattggaaacattgatggtgagggaagagagccttgatgaactagagaggagggtgtttaagcatatttggaagagtccggcgcc |
53561947 |
T |
|
| Q |
402 |
gaccaaggtcgttgtcttctcgtggaaactcctctatgatagaattcctacaaagattaatctagctattaggaattgtttcccgccggatacatcttat |
501 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53561948 |
gtccaaggtcgttgtcttctcgtggaaactcctccatgatagaattcctacgaagattaatctagctattaggaattgtttcccaccggatacatcttat |
53562047 |
T |
|
| Q |
502 |
gagtg----------aataacgcggctgaagatgctactcatttatttcttcattgtgaaggggtgaaggtggtttggtgtaagatcatggaatggttgg |
591 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562048 |
gagtgtgtgtggtgtaataacacggctgaagatgctactcatttatttcttcattgtgaaggggtgaaggtggtttggtgtaagatcatggaatggttgg |
53562147 |
T |
|
| Q |
592 |
actttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtgttggaattatttg |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
53562148 |
actttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtgttagaattatttg |
53562247 |
T |
|
| Q |
692 |
gcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttg |
791 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
53562248 |
gcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----cagtcaaggttttg |
53562343 |
T |
|
| Q |
792 |
tcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtgaggttgttttg |
891 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562344 |
tcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtgaggttgttttg |
53562443 |
T |
|
| Q |
892 |
tttgggagagctgctgctgcgtggtgtctggctgtgttcattgaggttgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatg |
991 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562444 |
tttgggagagctgctgctgcgtggtgtctggctgtgttcattgaggctgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatg |
53562543 |
T |
|
| Q |
992 |
ctttctgtgatgct |
1005 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
53562544 |
ctttctgtgttgct |
53562557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 579 - 881
Target Start/End: Complemental strand, 38185570 - 38185268
Alignment:
| Q |
579 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtg |
678 |
Q |
| |
|
||||| ||| |||| || ||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||| ||||| ||||| |||| || | |
|
|
| T |
38185570 |
atggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaattgagcggtttataataaaaagatttgtaagggag |
38185471 |
T |
|
| Q |
679 |
ttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatc |
778 |
Q |
| |
|
| | ||||||||||||| | |||||||| ||||||||||| ||||| || | || ||| |||||||| || | || ||||| || ||||||| |
|
|
| T |
38185470 |
tgaggcttatttggcatgccgccatttggagcatatggaaagctaggaatgatataacttttaataatgcagtgttggattgtgaggcattgctggaatc |
38185371 |
T |
|
| Q |
779 |
tgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcgg |
878 |
Q |
| |
|
| | ||||| ||| | ||||||||| |||| || ||| |||| |||||||| | |||||| |||||||||| |||||||| ||||| || ||| ||||| |
|
|
| T |
38185370 |
tattaaggtgttggcctggaggtggtgttttggtagaataaacttgccggcatgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcgg |
38185271 |
T |
|
| Q |
879 |
tga |
881 |
Q |
| |
|
||| |
|
|
| T |
38185270 |
tga |
38185268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 565 - 881
Target Start/End: Complemental strand, 34821540 - 34821223
Alignment:
| Q |
565 |
tttggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataa |
664 |
Q |
| |
|
||||| ||||| ||||||| ||||| ||| ||||| ||||||| || |||||| | ||||| ||||| | ||||||||||| || ||| ||||| || |
|
|
| T |
34821540 |
tttggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaa |
34821441 |
T |
|
| Q |
665 |
gatccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgag |
764 |
Q |
| |
|
||| ||||| || || | |||||||||| || | |||||||| ||||||||||||||||| || | ||||| || ||||||||| | || ||||| |
|
|
| T |
34821440 |
gattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttagattttgag |
34821341 |
T |
|
| Q |
765 |
gatctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaagg |
864 |
Q |
| |
|
| ||||||||||| | |||||||||| ||||||||| |||| || |||| | ||||| | | |||||| ||||| |||| |||||||| |||| |
|
|
| T |
34821340 |
gcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaatccaaagg |
34821241 |
T |
|
| Q |
865 |
a-ctgtttgatgcggtga |
881 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
34821240 |
atttgtttgatgcggtga |
34821223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 567 - 881
Target Start/End: Original strand, 4903679 - 4903993
Alignment:
| Q |
567 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
666 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||| ||||||||||||| | |||| || || ||| |
|
|
| T |
4903679 |
tggtgtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtggcaatgttggaatggtgagtttttgaacaaaaagc |
4903778 |
T |
|
| Q |
667 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
766 |
Q |
| |
|
| || | |||| | || | ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| |
|
|
| T |
4903779 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggagga |
4903878 |
T |
|
| Q |
767 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
866 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||| |||||| || || || | | ||||||||||| || ||||||| ||||||| ||||| |
|
|
| T |
4903879 |
gctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggat |
4903978 |
T |
|
| Q |
867 |
tgtttgatgcggtga |
881 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4903979 |
tgtttgttgcggtga |
4903993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 579 - 859
Target Start/End: Original strand, 1557167 - 1557447
Alignment:
| Q |
579 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtg |
678 |
Q |
| |
|
||||| ||| |||||||||||||| |||| || || ||||| |||||| ||||||||||||||| |||||||||| | ||||| ||||| || || |||| |
|
|
| T |
1557167 |
atggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcggaagggtg |
1557266 |
T |
|
| Q |
679 |
ttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatc |
778 |
Q |
| |
|
| | ||||||||||||| ||||||| || |||||||| ||||| |||| | ||||||||||| | | || |||| | ||| |||||||| |
|
|
| T |
1557267 |
tgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgacattgtgttcaataatgcgactttagaccttgaagctctcttggaatc |
1557366 |
T |
|
| Q |
779 |
tgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcc |
859 |
Q |
| |
|
| ||||| ||||| ||||||||| ||||||| ||||| | ||||| || | |||||| ||||| |||| |||||||| |
|
|
| T |
1557367 |
aattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatcc |
1557447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 334
Target Start/End: Original strand, 4903175 - 4903435
Alignment:
| Q |
75 |
aaatatccaagattgttctccttgtctaaccaaaaagagggttttattggggactgtcgggtgagtggcagggtgggaggtaattgggattttagttgga |
174 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| |||||||| || | ||| ||| | | | | |||||| |||| ||||||||||| |
|
|
| T |
4903175 |
aaatatccaagattgttctccttgtctaatcagaaagaggcttttattgaagatttatgggagagagacggtcttggaggttggtgggcttttagttgga |
4903274 |
T |
|
| Q |
175 |
gaagggatctttt-gtgtgggaggaggatcttgttgatgcaatgttggaggatttgaatggttttgtgttttcggatgttgaagacgattggcgttggag |
273 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| || ||| || | |||||||||||||| ||||| || || | | || |||||| |||||| |
|
|
| T |
4903275 |
gaagggacctttttgtgtgggaggatttacttcttcatgatttgctcgaggatttgaatgggtttgtcttgggcgaggagggggatgattggatttggag |
4903374 |
T |
|
| Q |
274 |
tttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatg |
334 |
Q |
| |
|
||||| ||||| ||| |||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
4903375 |
gttggatgaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatg |
4903435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 1556846 - 1556915
Alignment:
| Q |
269 |
tggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtga |
338 |
Q |
| |
|
||||| ||||| |||||||| |||| ||||| ||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
1556846 |
tggaggttggaggaggacggagctttctcggtcaaatcaatgtattcaaaattggaaacaaggatggtga |
1556915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 567 - 881
Target Start/End: Complemental strand, 22153878 - 22153564
Alignment:
| Q |
567 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
666 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||| |||| || | ||||| |||||| || |||||||||||||||| | |||| || || ||| |
|
|
| T |
22153878 |
tggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagc |
22153779 |
T |
|
| Q |
667 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
766 |
Q |
| |
|
| || |||| | || | ||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |
|
|
| T |
22153778 |
tgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaa |
22153679 |
T |
|
| Q |
767 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
866 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |
|
|
| T |
22153678 |
gctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtt |
22153579 |
T |
|
| Q |
867 |
tgtttgatgcggtga |
881 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
22153578 |
tgtttgttgcggtga |
22153564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 567 - 881
Target Start/End: Complemental strand, 22209793 - 22209479
Alignment:
| Q |
567 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
666 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||| |||| || | ||||| |||||| || |||||||||||||||| | |||| || || ||| |
|
|
| T |
22209793 |
tggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagc |
22209694 |
T |
|
| Q |
667 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
766 |
Q |
| |
|
| || |||| | || | ||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |
|
|
| T |
22209693 |
tgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaa |
22209594 |
T |
|
| Q |
767 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
866 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |
|
|
| T |
22209593 |
gctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtt |
22209494 |
T |
|
| Q |
867 |
tgtttgatgcggtga |
881 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
22209493 |
tgtttgttgcggtga |
22209479 |
T |
|
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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 22154410 - 22154312
Alignment:
| Q |
26 |
tacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaagagggttttattgg |
124 |
Q |
| |
|
|||||| ||||| ||||| || |||| | |||||||||| ||| || ||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
22154410 |
tacgagcttttgaaatgaggtttggatgtgtaatagttcctttagggtgaaatatccaagattgttctccttgtctaatcagaaagaggcttttattgg |
22154312 |
T |
|
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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 22210325 - 22210227
Alignment:
| Q |
26 |
tacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaagagggttttattgg |
124 |
Q |
| |
|
|||||| ||||| ||||| || |||| | |||||||||| ||| || ||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
22210325 |
tacgagcttttgaaatgaggtttggatgtgtaatagttcctttagggtgaaatatccaagattgttctccttgtctaatcagaaagaggcttttattgg |
22210227 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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