View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_14 (Length: 497)
Name: NF16123_low_14
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 136 - 488
Target Start/End: Complemental strand, 5217894 - 5217542
Alignment:
| Q |
136 |
cttctcaatttggtgcatgaggttcctgtcagtaagcttcttgccagcttgatccgtgacgtggaacactgcattgtgtaacaaaaagagacacgcacca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5217894 |
cttctcaatttggtgcatgaggttcctgtcagtaagcttcttgccagcttgatccgtgacgtggaacactgcattgtgtaacaaaaagagacacgcacca |
5217795 |
T |
|
| Q |
236 |
cacaacttgtatcagaaccgaaccactaaaattttgctgatatcatatgataatgtggtagtcataataataggtcaaaaaacaagataaaagtaagcnn |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5217794 |
cacaacttgtatcagaaccgaaccactaaaattttgctgatatcatatgataatgtggtagtcataataataggtccaaaaacaagataaaagtaagctt |
5217695 |
T |
|
| Q |
336 |
nnnnnnaatgataaattgctcaattatcattatcatggtttatggaaaaatacaggtaaacaatgttaaaggaattccactctaagaaggagaaacactg |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5217694 |
tttttaaatgataaattgctcaattatcattatcatggtttatggaaaaatacaggtaaacaatgttaaaggaattccactctaagaaggataaacactg |
5217595 |
T |
|
| Q |
436 |
accgtccataaaccatccaccatctgaggaaatgtatgacttggaaatgatga |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5217594 |
accgtccataaaccatccaccatctgaggaaatgtatgacttggaaatgatga |
5217542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 5218569 - 5218458
Alignment:
| Q |
19 |
tatccatcccactcatctccaatgctgtgttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5218569 |
tatccatcccactcatctccaatgctgtgttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatc |
5218470 |
T |
|
| Q |
119 |
atctatgtcctc |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5218469 |
atctatgtcctc |
5218458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 483
Target Start/End: Original strand, 40128066 - 40128117
Alignment:
| Q |
432 |
actgaccgtccataaaccatccaccatctgaggaaatgtatgacttggaaat |
483 |
Q |
| |
|
||||||| ||||| |||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
40128066 |
actgaccatccattaaccatccaccatcagaagaaatgtatgatttggaaat |
40128117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University