View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_15 (Length: 474)
Name: NF16123_low_15
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 34933667 - 34933221
Alignment:
| Q |
1 |
aagaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttataagtagaatgagaagaa |
100 |
Q |
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| T |
34933667 |
aagaagaagaagctccaacgtatctatgtattttcattgcatgatagttttcgttcgtaatctctagggttgaagcttcttataagtagaatgagaagaa |
34933568 |
T |
|
| Q |
101 |
tttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcattcgcaaggtatc |
200 |
Q |
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| T |
34933567 |
tttgt---------ctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcactcgcaaggtatc |
34933477 |
T |
|
| Q |
201 |
tatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctcatggaatgatttcaagtaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34933476 |
tatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctcatggaatgatttcaagtaatga |
34933377 |
T |
|
| Q |
301 |
aggcatgaaaacaatgaaaaacacttacaaaaaagaacaggagaggtttgaatattctctcgtgtaaatggcacatgttcattcataaatagagaggctc |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34933376 |
aggcttgaaaacaatgaaaaacacttacaaaaaagaacaggagaggtttgaatattctctcgtgtaaagggcacatgttcattcataaatagagaggctc |
34933277 |
T |
|
| Q |
401 |
aggcttgggcttgaaaatatcattcagcccaaataactaactctttcggttataca |
456 |
Q |
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| T |
34933276 |
aggcttgggcttgaaaatatcattcagcccaaataactaactctttcggttataca |
34933221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 34927161 - 34926958
Alignment:
| Q |
2 |
agaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttataagtagaatgagaagaat |
101 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
34927161 |
agaagaagaagcttgaaggtatctatgtaatttcattgcatgacagttttttttcgtaatctctagggttgaagcttcttatacgtagaatgagaagaat |
34927062 |
T |
|
| Q |
102 |
ttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcattcgcaaggtatct |
201 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| || |||||||||| |
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| T |
34927061 |
ttgttgaacttgtctctctagggttgcattgcatgacagttttcgttcttatctctttcaatcttattttcatattcgttgcttcactctcaaggtatct |
34926962 |
T |
|
| Q |
202 |
atgt |
205 |
Q |
| |
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|||| |
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|
| T |
34926961 |
atgt |
34926958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 34926816 - 34926762
Alignment:
| Q |
402 |
ggcttgggcttgaaaatatcattcagcccaaataactaactctttcggttataca |
456 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926816 |
ggcttgggtttggaaatatcattcagcccaaataactaactctttcggttataca |
34926762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 34926885 - 34926842
Alignment:
| Q |
301 |
aggcatgaaaacaatgaaaaacacttacaaaaaagaacaggagag |
345 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34926885 |
aggcatgaaaacaatgaaaaacacttaca-aaaagaacaggagag |
34926842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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