View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_16 (Length: 470)
Name: NF16123_low_16
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 454
Target Start/End: Original strand, 39032475 - 39032912
Alignment:
| Q |
22 |
atggtgcatgttccagaaatctaggaaatgggggctgaaaaaattattgaaaggaaagattttggnnnnnnnn-----------atttagatatgaaaat |
110 |
Q |
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| T |
39032475 |
atggtgcatgttccagaaatctaggaaatgggggctgaaaaaattattgaaaggaaagattttgctttttttttttatttttttatttagatatgaatat |
39032574 |
T |
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| Q |
111 |
ttgcctgaatttgtgtagtcattgcaaaatcgttggtcatggctttgatgaatacatgcggatcgataaagacgaggtgaatatttatgatgttgaggtt |
210 |
Q |
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| T |
39032575 |
ttgcctgaatttttgtagtcattgcaaaatcgttggtcatggctttgatgaatacaagcggatcgataaagaccaaatgaatatttatgatgttgaggtt |
39032674 |
T |
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| Q |
211 |
aagatcaaaagaaaatcaatgaggtaaaaactgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataat |
310 |
Q |
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| T |
39032675 |
aagatcaaaagaaaaccgatgaggttaaaagtgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataat |
39032774 |
T |
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| Q |
311 |
gctacttctctcgacatattttctagcaaaaagatgacgaccttgttgctagnnnnnnnnattgcaactacaattaatcaactctttcttttttatccaa |
410 |
Q |
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| T |
39032775 |
gctacttctcgcgacata-tttctagcaaaaagatgacgaccttgttgctag-tttttttattgcaactac----aatcgactctttcttttttatccaa |
39032868 |
T |
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| Q |
411 |
ccacccatgatgtccaccaatttagatctaacggtgacattctt |
454 |
Q |
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| T |
39032869 |
ccacccatgatgtccaccaatttagatctaacggtgacattctt |
39032912 |
T |
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