View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_20 (Length: 439)

Name: NF16123_low_20
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_20
NF16123_low_20
[»] chr2 (6 HSPs)
chr2 (2-282)||(36541867-36542147)
chr2 (236-423)||(36542148-36542335)
chr2 (73-245)||(32689033-32689205)
chr2 (209-335)||(15692408-15692535)
chr2 (324-369)||(33782479-33782525)
chr2 (159-251)||(32007698-32007790)
[»] chr6 (1 HSPs)
chr6 (278-423)||(22505366-22505508)
[»] chr8 (1 HSPs)
chr8 (285-369)||(22449703-22449787)
[»] chr1 (1 HSPs)
chr1 (83-120)||(31343711-31343748)
[»] chr4 (2 HSPs)
chr4 (278-364)||(35189550-35189637)
chr4 (80-121)||(15871350-15871391)
[»] chr3 (1 HSPs)
chr3 (84-129)||(16999692-16999737)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 36541867 - 36542147
Alignment:
Q  2 accagagatcaaccaccttgatagaaaataaatatcacatgaattacatttttcacctttttgtagaccacattggactttggtgtcttcataaaagtta 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  36541867 accagagatcaaccaccttgataggaaataaatatcacatgaattacatttttcacctttttgtaggccacattggactttggtgtcttcataaaagttc 36541966  T
Q  102 tagatatggatgttatctttcatgttccactgttccttatccattttatgacctggaactccatatatgattaaaacaccgcacaaacttcacgtagaga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36541967 tagatatggatgttatctttcatgttccactgttccttatccattttgtgacctggaactccatatatgattaaaataccgcacaaacttcacgtagaga 36542066  T
Q  202 tcaacatgcctcactcattttcttttactcttttccccatttctcttcactgtaacaatcgtgatggatatactacaagag 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36542067 tcaacatgcctcactcgttttcttttactcttttccccatttctcttcactgtaacaatcgtgatggatatactacaagag 36542147  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 236 - 423
Target Start/End: Original strand, 36542148 - 36542335
Alignment:
Q  236 ccccatttctcttcactgtaacaatcgtgatggatatactacaagagacaacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggtt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  36542148 ccccatttctcttcactgtaacaatcgtgatggatatactacaagagacaacttgattgttcttgtaaaaaacatagcacaaccattgagttgtctggtt 36542247  T
Q  336 aggtgaattcgagctagtttcaaggtcttctttgtatatttttagtatagtgttaatttcttcggttctagctaaactctactaaaac 423  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  36542248 aggtgaattcgagccagtttcaaggtcttctttgtatatttttagtacagtgttaatttcttcagttctagctaaactctactaaaac 36542335  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 32689033 - 32689205
Alignment:
Q  73 attggactttggtgtcttcataaaagttatagatatggatgttatctttcatgttccactgttccttatccattttatgacctggaactccatatatgat 172  Q
    ||||||||||||||||| ||| |||||  | ||||||||||| |  |||||| ||||||||  |  | |||||| |  | |||  |||| ||||||||||    
T  32689033 attggactttggtgtctgcatgaaagtgttggatatggatgtgaaatttcatattccactggcctatctccattatgagtcctacaacttcatatatgat 32689132  T
Q  173 taaaacaccgcacaaacttcacgtagagatcaacatgcctcactcattttcttttactcttttccccatttct 245  Q
    ||||||||||||||||   || |||||||||| |||||||||||  | |||||| ||||||||  ||||||||    
T  32689133 taaaacaccgcacaaataacatgtagagatcagcatgcctcactagtgttctttcactcttttttccatttct 32689205  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 335
Target Start/End: Original strand, 15692408 - 15692535
Alignment:
Q  209 gcctcactcattttcttttactcttttccccatttctcttcactgtaacaatcgtgatggatatactac-aagagacaacttgattgttcttttaaaaaa 307  Q
    |||| |||||| ||||||||||||||||||| |||||||||| | ||||    ||||||| |||||| | || |||||||||||||| |||| ||||||     
T  15692408 gccttactcatattcttttactcttttccccgtttctcttcattttaacgtctgtgatggctatactccaaatagacaacttgattgctcttgtaaaaat 15692507  T
Q  308 catagcacgaccactgagttgtctggtt 335  Q
    ||||||| ||||   |||||||||||||    
T  15692508 catagcatgaccgaggagttgtctggtt 15692535  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 33782479 - 33782525
Alignment:
Q  324 agttgtctggttagg-tgaattcgagctagtttcaaggtcttctttg 369  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||    
T  33782479 agttgtatggttagggtgaatttgagctagtttcaaggtcttctttg 33782525  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 32007790 - 32007698
Alignment:
Q  159 actccatatatgattaaaacaccgcacaaact-tcacgtagagatcaacatgcctcactcattttcttttactcttttccccatttctcttcac 251  Q
    ||||||||||||||||||  |||||| |||   ||| ||||||||||| | |||||  |||| ||||||| |||||||||| ||||||||||||    
T  32007790 actccatatatgattaaat-accgcaaaaaaagtcatgtagagatcaaaacgcctcgatcatgttcttttcctcttttcccaatttctcttcac 32007698  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 423
Target Start/End: Complemental strand, 22505508 - 22505366
Alignment:
Q  278 aagagacaacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggtta-ggtgaattcgagctagtttcaaggtcttctttgtatattt 376  Q
    |||||||||||| |||| |||| |||||| ||||||||||| |  |||||||||||||| |||||||||||||  |||||||  | | ||| ||||||||    
T  22505508 aagagacaacttcattgctcttgtaaaaagcatagcacgacta--gagttgtctggttagggtgaattcgagccggtttcaa--tgtacttcgtatattt 22505413  T
Q  377 ttagtatagtgttaatttcttcggttctagctaaactctactaaaac 423  Q
    | |||  | |||||||||||||  || | ||||||||||||||||||    
T  22505412 tgagtgcaatgttaatttcttcactttttgctaaactctactaaaac 22505366  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 22449703 - 22449787
Alignment:
Q  285 aacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggttaggtgaattcgagctagtttcaaggtcttctttg 369  Q
    |||||||||| |||  |||||| | |||||| ||||| ||||||| |||||||||||||| ||||  ||||||||||||||||||    
T  22449703 aacttgattgatctagtaaaaaccttagcaccaccacagagttgtttggttaggtgaatttgagccggtttcaaggtcttctttg 22449787  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 31343748 - 31343711
Alignment:
Q  83 ggtgtcttcataaaagttatagatatggatgttatctt 120  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31343748 ggtgtcttcatgaaagttatagatatggatgttatctt 31343711  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 35189637 - 35189550
Alignment:
Q  278 aagagacaacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggtta-ggtgaattcgagctagtttcaaggtctt 364  Q
    ||||||| ||||||||  |||||||||||  |||||||||||||  |||||| |||||| ||||||||||| |   ||||||||||||    
T  35189637 aagagaccacttgatttctcttttaaaaagtatagcacgaccacacagttgtatggttagggtgaattcgatccgatttcaaggtctt 35189550  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 15871350 - 15871391
Alignment:
Q  80 tttggtgtcttcataaaagttatagatatggatgttatcttt 121  Q
    ||||||||||||||||||||| |||||||| |||||| ||||    
T  15871350 tttggtgtcttcataaaagttgtagatatgcatgttagcttt 15871391  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 16999692 - 16999737
Alignment:
Q  84 gtgtcttcataaaagttatagatatggatgttatctttcatgttcc 129  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||    
T  16999692 gtgtcttcatgaaagttgtagatatgaatgttatctttcattttcc 16999737  T

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