View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_22 (Length: 424)
Name: NF16123_low_22
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 411933 - 411508
Alignment:
| Q |
1 |
agagactcattaacttcatttctccaatcaatacctatatatatatg-----------------aatcataagatgaaattcatatatttatgaatcatc |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
411933 |
agagactcattaacttcatttctccaatcaatacctatatatatatatagtattactttctaacaatcacaagatgaaattcatatatttatgaatcatc |
411834 |
T |
|
| Q |
84 |
tatttaaagcttgagaaacacaaactcctcgatagcaggcacagctccaatattctcaagagcttccttatttggctcttcatcgacgccaatagccata |
183 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411833 |
tatttaaagcttgagaaacacaaactcctcaatagcaggcacagctccaatattctcaagagcttccttatttggctcttcatcgacgccaatagccata |
411734 |
T |
|
| Q |
184 |
agcgctttcttcctacgcgatgttcttccaacgctcataaagctcacattcacatttttctcgcctaatatgtttccgacagtaccaatcatcccaggtt |
283 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411733 |
agcgctttcttcctacgcgatgttcttccaacactcataaagctcacattcacatttttctcgcctaatatgtttccgacagtaccaatcatcccaggtt |
411634 |
T |
|
| Q |
284 |
gatcaatctgtctgcacaaaatcagattcccttctaagctcacatccacagcaaaagatcccacacatgtaaggtgtggtgtaccgtacttcacttttcc |
383 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411633 |
gatcaatctgtctgcacaaaatcagattcccttctaagctcacatccacagcaaaagatcccacacatgtaaggtgtggtgtaccgtacttcacttttcc |
411534 |
T |
|
| Q |
384 |
atcaatgcttatctgaccagtctctg |
409 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
411533 |
atcaatgcttatctgaccagtctctg |
411508 |
T |
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