View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_24 (Length: 407)
Name: NF16123_low_24
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 48686573 - 48686960
Alignment:
| Q |
7 |
gcaaattgcctaccatatactattctgcaatagtatatggtgttaagttagtgaaagtacttgtcctgtaaaccttgcttatgaaattttattgaaatcc |
106 |
Q |
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| T |
48686573 |
gcaaattgcctaccatatactattctgcaatagtatatggtgttaagttagtgaaagtacttgttctgtaaaccttgcttatgaaattttattgaaatcc |
48686672 |
T |
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| Q |
107 |
aagaatattgaaatgatttgacttcatgcatgtaggagtgttcccttctaattaccgggaagtggaactaactaataaaggaatatactgatttcaactt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48686673 |
aagaatattgaaatgatttgacttcatgcatgtaggagtgttcccttctaattaccgggaagtggaactaactaataaaggaatatactgatttcaactt |
48686772 |
T |
|
| Q |
207 |
tcccagttagaaattactattagcacaccactaaaggcagtgatttgtcacaaattcattgcatgcagcacatctatcttgaatactgatgacattttgc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48686773 |
tcccagttagaaattactattagcacaccactaaaggcagtgatttgtcacaaattcattgcatgcagcacatctatcttgaatactgatgacattttgc |
48686872 |
T |
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| Q |
307 |
tatatagtcagtcaatagggttatttgcgttgcatgaactaaatgaatttaactataatctacgcactctttttgtctcttgtggata |
394 |
Q |
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| T |
48686873 |
tatatagtcagtcaatagggttacttgcgttgcatgaactaaatgaatttaactataatctacgcactccttttgtctcttgtggata |
48686960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 48696480 - 48696584
Alignment:
| Q |
205 |
tttcccagttagaaattactattagcacaccactaaaggcagtgatttgtcacaaattcattgcatgcagcacatctatcttgaatactgatgacatttt |
304 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||| ||||| | |||| |
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| T |
48696480 |
tttccctgttagaaattactattaggacaccactaaaggcagtgatttgtcgcaaatccattgcatgcagcacacctatactgaatattgatggcttttt |
48696579 |
T |
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| Q |
305 |
gctat |
309 |
Q |
| |
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||||| |
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| T |
48696580 |
gctat |
48696584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 48699510 - 48699575
Alignment:
| Q |
195 |
tgatttcaactttcccagttagaaattactattagcacaccactaaaggcagtgatttgtcacaaa |
260 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48699510 |
tgatttccactttcccagttagaacttactattagcacaccactaaaggcagtgatctgtcacaaa |
48699575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 48691028 - 48691067
Alignment:
| Q |
203 |
actttcccagttagaaattactattagcacaccactaaag |
242 |
Q |
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| T |
48691028 |
actttcccagttagaaattactataagcacaccactaaag |
48691067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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