View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_25 (Length: 405)

Name: NF16123_low_25
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_25
NF16123_low_25
[»] chr5 (7 HSPs)
chr5 (19-120)||(32232679-32232780)
chr5 (272-376)||(32232577-32232681)
chr5 (120-238)||(43406005-43406117)
chr5 (127-238)||(30327657-30327762)
chr5 (202-240)||(20706576-20706614)
chr5 (197-238)||(28282401-28282442)
chr5 (197-233)||(32398282-32398318)
[»] chr8 (3 HSPs)
chr8 (120-238)||(28300082-28300194)
chr8 (125-238)||(12959707-12959814)
chr8 (189-238)||(19756429-19756478)
[»] chr6 (8 HSPs)
chr6 (125-238)||(6922635-6922742)
chr6 (125-238)||(20599396-20599500)
chr6 (126-238)||(12606651-12606757)
chr6 (188-232)||(21023693-21023737)
chr6 (137-230)||(7326340-7326427)
chr6 (192-234)||(29045826-29045868)
chr6 (195-238)||(5925645-5925688)
chr6 (125-166)||(21023753-21023794)
[»] chr4 (10 HSPs)
chr4 (125-238)||(31351674-31351781)
chr4 (125-238)||(35130612-35130719)
chr4 (120-238)||(50263991-50264102)
chr4 (125-238)||(35010384-35010491)
chr4 (197-233)||(28091335-28091371)
chr4 (127-238)||(49479458-49479563)
chr4 (191-231)||(39691518-39691558)
chr4 (189-238)||(45333453-45333504)
chr4 (189-238)||(45341143-45341194)
chr4 (194-238)||(54733278-54733322)
[»] scaffold0178 (1 HSPs)
scaffold0178 (189-238)||(9704-9753)
[»] chr3 (11 HSPs)
chr3 (126-238)||(54240605-54240711)
chr3 (125-238)||(38745294-38745401)
chr3 (191-238)||(41259954-41260001)
chr3 (194-231)||(17002959-17002996)
chr3 (127-172)||(35962940-35962985)
chr3 (197-233)||(52910394-52910430)
chr3 (199-238)||(11988932-11988971)
chr3 (188-238)||(51829558-51829608)
chr3 (188-233)||(21177041-21177086)
chr3 (125-161)||(7950931-7950967)
chr3 (125-161)||(51816022-51816058)
[»] chr2 (8 HSPs)
chr2 (188-238)||(14368417-14368467)
chr2 (188-238)||(31068894-31068944)
chr2 (188-233)||(9932020-9932065)
chr2 (123-168)||(34028095-34028140)
chr2 (188-233)||(44287848-44287893)
chr2 (126-238)||(8915565-8915671)
chr2 (120-168)||(9198995-9199043)
chr2 (125-238)||(34319816-34319923)
[»] chr1 (4 HSPs)
chr1 (188-238)||(8757275-8757325)
chr1 (188-238)||(2098802-2098852)
chr1 (120-151)||(1923683-1923714)
chr1 (193-238)||(2661634-2661679)
[»] chr7 (14 HSPs)
chr7 (121-232)||(44165893-44165999)
chr7 (194-238)||(27744641-27744685)
chr7 (127-238)||(23198526-23198630)
chr7 (125-233)||(32958489-32958591)
chr7 (121-181)||(25091157-25091217)
chr7 (120-163)||(40097977-40098020)
chr7 (204-238)||(7683451-7683485)
chr7 (196-238)||(27227265-27227307)
chr7 (188-238)||(37307716-37307766)
chr7 (188-225)||(5808398-5808435)
chr7 (188-233)||(13054652-13054697)
chr7 (188-233)||(24250152-24250197)
chr7 (197-238)||(41780525-41780566)
chr7 (188-233)||(47684493-47684538)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 32232780 - 32232679
Alignment:
Q  19 ttattgctatatgttcatgctttataccagaactttatacaatattaattaacttgcaagtattctatgtggtatttttaaggaataacattgttttcct 118  Q
    |||||||||||||||||||||||||||||| |||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32232780 ttattgctatatgttcatgctttataccagtacttttcaaaatattaataaacttgcaagtattctatgtggtatttttaaggaataacattgttttcct 32232681  T
Q  119 ct 120  Q
    ||    
T  32232680 ct 32232679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 32232681 - 32232577
Alignment:
Q  272 tcttaaattgcatgtttatatgcgatagagatcctgttaatccgaagttcatttgaaatataagtaaagcatgaataaagattgttttaacgaagattta 371  Q
    |||||||||||||||||||| | |||  |||| | | ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || |||||    
T  32232681 tcttaaattgcatgtttataagggatgaagattccgctaatccgaagttcatttgaaatataagaaaagcacgaataaaaattgttttaactaatattta 32232582  T
Q  372 aattt 376  Q
    |||||    
T  32232581 aattt 32232577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 43406117 - 43406005
Alignment:
Q  120 tgtctcgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataa 219  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||  ||| ||||      ||||| | ||||| |||||||||||| |||||    
T  43406117 tgtctcgtaagtgtagctcagttggtagctaccagagataatttgtgcaaggaccggagttc------gaacctcagattctccacttctccacacataa 43406024  T
Q  220 tgtgtgtgaatctaaccac 238  Q
    ||||||||| |||||||||    
T  43406023 tgtgtgtgagtctaaccac 43406005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 30327657 - 30327762
Alignment:
Q  127 taagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtgt 226  Q
    |||||||||||||||| ||||||| |||  ||||||| |||| ||  ||||||||      |||||||| |||| |||||||||||| |||||| |||||    
T  30327657 taagtgtagctcagttggtagctatcagagataatttatgcaggggccggggttc------gaaccccgaattcgccacttctccacacataatatgtgt 30327750  T
Q  227 gaatctaaccac 238  Q
    ||||||| ||||    
T  30327751 gaatctagccac 30327762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 20706576 - 20706614
Alignment:
Q  202 ccacttctccacgcataatgtgtgtgaatctaaccacca 240  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  20706576 ccacttctccacacgtaatgtgtgtgaatctaaccacca 20706614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 28282401 - 28282442
Alignment:
Q  197 attccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  28282401 attcctcacttctccacacataatatgtgtgaatctaaccac 28282442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 32398282 - 32398318
Alignment:
Q  197 attccccacttctccacgcataatgtgtgtgaatcta 233  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  32398282 attccccacttctccacacataatgtatgtgaatcta 32398318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 28300082 - 28300194
Alignment:
Q  120 tgtctcgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataa 219  Q
    |||| |||| ||||||||||||| ||||||||||   |||||||||||| ||  ||||||||      |||||||||||||||||||||||||  |||||    
T  28300082 tgtcccgtaggtgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttc------gaaccccggattccccacttctccatacataa 28300175  T
Q  220 tgtgtgtgaatctaaccac 238  Q
    |||||||||||||| ||||    
T  28300176 tgtgtgtgaatctagccac 28300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 12959707 - 12959814
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    |||||||||||||||||| ||||||| |||| |||| ||||||| || | |||||||      ||||||| |||||||||||| | | |  |||||||||    
T  12959707 cgtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttc------gaaccccagattccccacttattcgcatataatgtgt 12959800  T
Q  225 gtgaatctaaccac 238  Q
    ||||||||| ||||    
T  12959801 gtgaatctagccac 12959814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 19756478 - 19756429
Alignment:
Q  189 aaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||| ||||    
T  19756478 aacctcggaatccccacttctccacacataatgtgtgtgaatctagccac 19756429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 6922742 - 6922635
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    ||||||||||| |||||| |||||||||| |||||||||||||| || |||||||||       ||| || ||||||||||||||||||  |||||||||    
T  6922742 cgtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttc------aaactccagattccccacttctccacatataatgtgt 6922649  T
Q  225 gtgaatctaaccac 238  Q
    ||||||||| ||||    
T  6922648 gtgaatctagccac 6922635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 20599500 - 20599396
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    |||||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||       |||||||||||||||||||||||||| |||||   ||    
T  20599500 cgtaagtgtagctcagttggtagctaccagggatattatgtgcaagggtcggggtt------tgaaccccggattccccacttctccacacataa---gt 20599410  T
Q  225 gtgaatctaaccac 238  Q
    |||| |||||||||    
T  20599409 gtgagtctaaccac 20599396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 12606651 - 12606757
Alignment:
Q  126 gtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtg 225  Q
    ||||||||||||||||| |||||||| ||| |||||||||| | |  ||| |||||      ||||||| |||||||||||||| |||  ||||||||||    
T  12606651 gtaagtgtagctcagttggtagctactagggataatttgtgtaggaatcgaggttc------gaaccccagattccccacttcttcacatataatgtgtg 12606744  T
Q  226 tgaatctaaccac 238  Q
    |||||||| ||||    
T  12606745 tgaatctagccac 12606757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 21023737 - 21023693
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatct 232  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  21023737 gaaccccggattctccacttctccacacataatgtgtgtgaatct 21023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 7326427 - 7326340
Alignment:
Q  137 tcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtgtgaat 230  Q
    |||||| |||||||||||| |||||||| ||| || ||||| |||      ||||||  |||||||||||||||||| ||||||||||||||||    
T  7326427 tcagttggtagctaccagggataatttgagcaggggtcgggtttc------gaaccctagattccccacttctccacacataatgtgtgtgaat 7326340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 29045826 - 29045868
Alignment:
Q  192 cccggattccccacttctccacgcataatgtgtgtgaatctaa 234  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  29045826 cccggattccccacttctccatacataatgtgtgtgaatctaa 29045868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 5925645 - 5925688
Alignment:
Q  195 ggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||    
T  5925645 ggattccccacttcttcacacataatgtgtgtgaatctagccac 5925688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 21023794 - 21023753
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtg 166  Q
    ||||||||||||||| || |||||||||||| ||||||||||    
T  21023794 cgtaagtgtagctcaattggtagctaccagggataatttgtg 21023753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 31351781 - 31351674
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    |||||||||||||||||| |||||||||||  |||||||||||| || |||||||||      |||| ||||||| |||| |||||||| |||||| |||    
T  31351781 cgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttc------gaactccggatttcccatttctccacacataatatgt 31351688  T
Q  225 gtgaatctaaccac 238  Q
    ||||||||| ||||    
T  31351687 gtgaatctagccac 31351674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 35130719 - 35130612
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    ||||||||||| |||||| |||||||||||  |||||||||||| ||  ||||||||      |||||||||||| ||||||||| ||| ||| ||||||    
T  35130719 cgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttc------gaaccccggatttcccacttcttcacacattatgtgt 35130626  T
Q  225 gtgaatctaaccac 238  Q
    ||||||||| ||||    
T  35130625 gtgaatctagccac 35130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 50264102 - 50263991
Alignment:
Q  120 tgtctcgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataa 219  Q
    |||| |||||||||| ||||||| |||||||| ||| |||||||||||| ||  ||||| ||      ||| |||||||||||||||||||||| ||| |    
T  50264102 tgtcccgtaagtgtaactcagttggtagctac-agggataatttgtgcaggggccggggctc------gaaacccggattccccacttctccacacatga 50264010  T
Q  220 tgtgtgtgaatctaaccac 238  Q
    |||||||||||||| ||||    
T  50264009 tgtgtgtgaatctagccac 50263991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 35010491 - 35010384
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    ||||||| |||||||||| ||||||| |||  |||||||||||| |  |||||||||      |||| ||||||| ||||||||||||| ||||||||||    
T  35010491 cgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttc------gaactccggatttcccacttctccacacataatgtgt 35010398  T
Q  225 gtgaatctaaccac 238  Q
     |||||||| ||||    
T  35010397 atgaatctagccac 35010384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 28091371 - 28091335
Alignment:
Q  197 attccccacttctccacgcataatgtgtgtgaatcta 233  Q
    ||||||||||||||||| |||||||||||||||||||    
T  28091371 attccccacttctccacacataatgtgtgtgaatcta 28091335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 49479458 - 49479563
Alignment:
Q  127 taagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtgt 226  Q
    ||||||||| |||||| ||||||| ||| |||||||| || | || | |||||||      ||| |||| ||| || |||||||||| ||||||||||||    
T  49479458 taagtgtagttcagttggtagctatcagaaataatttatgtaggggtaggggttc------gaatcccgaatttccaacttctccacacataatgtgtgt 49479551  T
Q  227 gaatctaaccac 238  Q
    ||||||||||||    
T  49479552 gaatctaaccac 49479563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 39691518 - 39691558
Alignment:
Q  191 ccccggattccccacttctccacgcataatgtgtgtgaatc 231  Q
    |||||||||||||||||||||| || ||| |||||||||||    
T  39691518 ccccggattccccacttctccatgcttaaagtgtgtgaatc 39691558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 45333504 - 45333453
Alignment:
Q  189 aaccccggattccccacttctccacgc--ataatgtgtgtgaatctaaccac 238  Q
    ||||||| ||||||||||||||||| |  |||||||||||||||||| ||||    
T  45333504 aaccccgaattccccacttctccacacatataatgtgtgtgaatctagccac 45333453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 45341194 - 45341143
Alignment:
Q  189 aaccccggattccccacttctccacgc--ataatgtgtgtgaatctaaccac 238  Q
    ||||||| ||||||||||||||||| |  |||||||||||||||||| ||||    
T  45341194 aaccccgaattccccacttctccacacatataatgtgtgtgaatctagccac 45341143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 54733322 - 54733278
Alignment:
Q  194 cggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||||||| ||| ||||||| ||||||||||||||||||| ||||    
T  54733322 cggattcctcacctctccacacataatgtgtgtgaatctagccac 54733278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 9753 - 9704
Alignment:
Q  189 aaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9753 aaccccggattccccacttctccacacataatgtgtgtgaatctagccac 9704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 54240605 - 54240711
Alignment:
Q  126 gtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtg 225  Q
    |||| |||||||||||| | |||||||| | | ||| |||||| || |||||||||      ||||| ||||||  ||||||||||||||||||||||||    
T  54240605 gtaaatgtagctcagttggcagctaccaaggacaatatgtgcaggggtcggggttc------gaacctcggattttccacttctccacgcataatgtgtg 54240698  T
Q  226 tgaatctaaccac 238  Q
    |||||||||||||    
T  54240699 tgaatctaaccac 54240711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 38745401 - 38745294
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    ||||| ||||||| |||| || | ||||||| |||||||||||| || ||||| |||      |||||||| ||||||||||||||||| || |||||||    
T  38745401 cgtaaatgtagcttagttggtggttaccagggataatttgtgcaggggtcgggattc------gaaccccgaattccccacttctccacacaaaatgtgt 38745308  T
Q  225 gtgaatctaaccac 238  Q
    ||||||||| ||||    
T  38745307 gtgaatctagccac 38745294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 41260001 - 41259954
Alignment:
Q  191 ccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  41260001 ccccgaattccccacttctccacacataatgtgtgtgaatctagccac 41259954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 17002959 - 17002996
Alignment:
Q  194 cggattccccacttctccacgcataatgtgtgtgaatc 231  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17002959 cggattccccacttctccacacataatgtgtgtgaatc 17002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 35962985 - 35962940
Alignment:
Q  127 taagtgtagctcagttagtagctaccaggaataatttgtgcaaggt 172  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||    
T  35962985 taagtgtaggtcagttggtagctaccatgaataatttgtgcaaggt 35962940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 52910430 - 52910394
Alignment:
Q  197 attccccacttctccacgcataatgtgtgtgaatcta 233  Q
    ||||||||||||||||| |||||||||||||||||||    
T  52910430 attccccacttctccacacataatgtgtgtgaatcta 52910394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 11988971 - 11988932
Alignment:
Q  199 tccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  11988971 tccccacttctccacacataatgtgtgtgaatctagccac 11988932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 51829608 - 51829558
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||||| |||||| ||||||||||| |||||||| |||||||||| ||||    
T  51829608 gaaccccagattcctcacttctccacacataatgtatgtgaatctagccac 51829558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 21177086 - 21177041
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatcta 233  Q
    ||||| || ||||||||||||||||| |||||||||||| ||||||    
T  21177086 gaacctcgaattccccacttctccacacataatgtgtgtaaatcta 21177041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 7950931 - 7950967
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataat 161  Q
    |||||||||||||||||| |||||||||||| |||||    
T  7950931 cgtaagtgtagctcagttggtagctaccagggataat 7950967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 51816022 - 51816058
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataat 161  Q
    |||||||||||||||||| |||||||||||| |||||    
T  51816022 cgtaagtgtagctcagttggtagctaccagggataat 51816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 14368467 - 14368417
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  14368467 gaaccacggattccccacttctccacacataatgtgtgtgaatctagccac 14368417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 31068944 - 31068894
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||||    
T  31068944 gaactccggattccccacttctccacacttaatgtgtgtgaatctaaccac 31068894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 9932065 - 9932020
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatcta 233  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  9932065 gaaccccggattccccacttctccacatataatgtgtgtgaatcta 9932020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 34028095 - 34028140
Alignment:
Q  123 ctcgtaagtgtagctcagttagtagctaccaggaataatttgtgca 168  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  34028095 ctcgtaagtgtagctcagttagtagctaccagggataatttttgca 34028140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 44287848 - 44287893
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatcta 233  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  44287848 gaactccggattccccacttctccacacataatgtgtgtgaatcta 44287893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 8915565 - 8915671
Alignment:
Q  126 gtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtg 225  Q
    ||||||| || |||||| ||||||| ||| ||||||||||| | || | |||||||      | |||||||||||||||||||||||   ||||||||||    
T  8915565 gtaagtgaagttcagttggtagctatcagaaataatttgtgaatgggttggggttc------gtaccccggattccccacttctccataaataatgtgtg 8915658  T
Q  226 tgaatctaaccac 238  Q
    |||||||| ||||    
T  8915659 tgaatctagccac 8915671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 9199043 - 9198995
Alignment:
Q  120 tgtctcgtaagtgtagctcagttagtagctaccaggaataatttgtgca 168  Q
    |||| |||||||||||||||||| |||||||||||  ||||||||||||    
T  9199043 tgtcccgtaagtgtagctcagttggtagctaccagagataatttgtgca 9198995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 34319923 - 34319816
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    |||||||||| ||||||| ||||||| |||| |||||||||||| ||  | || |||       ||||| ||||||| |||||||| || ||||||||||    
T  34319923 cgtaagtgtacctcagttggtagctatcagggataatttgtgcaggggccaggattct------aaccctggattcctcacttctctacacataatgtgt 34319830  T
Q  225 gtgaatctaaccac 238  Q
    ||||||||| ||||    
T  34319829 gtgaatctagccac 34319816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 8757325 - 8757275
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  8757325 gaaccctggattccccacgtctccacacataatgtgtgtgaatctaaccac 8757275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 2098802 - 2098852
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||| ||||    
T  2098802 gaaccccggattctccacttctccacatataatgtgtgtgaatctagccac 2098852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 151
Target Start/End: Original strand, 1923683 - 1923714
Alignment:
Q  120 tgtctcgtaagtgtagctcagttagtagctac 151  Q
    ||||||||||||||||||||||||||||||||    
T  1923683 tgtctcgtaagtgtagctcagttagtagctac 1923714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 2661679 - 2661634
Alignment:
Q  193 ccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  2661679 ccggattcctcacttctccacacataatatgtgtgaatctagccac 2661634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 44165999 - 44165893
Alignment:
Q  121 gtctcgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggatt-ccccacttctccacgcataa 219  Q
    |||||||||||| ||||||||| |||||||||||| ||||||| ||||| | ||||| |||      |||||  | ||| |||||||||||||| |||||    
T  44165999 gtctcgtaagtgcagctcagttggtagctaccagggataatttatgcaaagatcgggattc------gaaccttgaattcccccacttctccacacataa 44165906  T
Q  220 tgtgtgtgaatct 232  Q
    |||||||||||||    
T  44165905 tgtgtgtgaatct 44165893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 27744641 - 27744685
Alignment:
Q  194 cggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  27744641 cggattccccacttctccacacataatgtgtgtgaatttaaccac 27744685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 23198630 - 23198526
Alignment:
Q  127 taagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgtgt 226  Q
    ||||||||||||||||  |||||| || | |||||||||||| || | |||||||       || ||| |||||||||||||||||| ||||||||||||    
T  23198630 taagtgtagctcagttgatagctatcaaggataatttgtgcaggggttggggttc-------aaaccccgattccccacttctccacacataatgtgtgt 23198538  T
Q  227 gaatctaaccac 238  Q
     |||||| ||||    
T  23198537 aaatctagccac 23198526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 32958489 - 32958591
Alignment:
Q  125 cgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttccgttcggaaccccggattccccacttctccacgcataatgtgt 224  Q
    |||||||||||||| ||| ||||||||||  ||||||||||||| |  || | ||||      ||||||||||||| |||||| ||||| | ||||||||    
T  32958489 cgtaagtgtagctcggttggtagctaccaaaaataatttgtgcaggagtcagagttc------gaaccccggattctccacttatccacacttaatgtgt 32958582  T
Q  225 gtgaatcta 233  Q
    |||||||||    
T  32958583 gtgaatcta 32958591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 25091157 - 25091217
Alignment:
Q  121 gtctcgtaagtgtagctcagttagtagctaccaggaataatttgtgcaaggttcggggttc 181  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||| || ||| |||||    
T  25091157 gtctcgtatgtttagctcagttggtagctaccagggataatttgtgcaggggtcgaggttc 25091217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 40098020 - 40097977
Alignment:
Q  120 tgtctcgtaagtgtagctcagttagtagctaccaggaataattt 163  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||    
T  40098020 tgtctcgtacgtgtagctcagttggtagctactaggaataattt 40097977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 7683451 - 7683485
Alignment:
Q  204 acttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  7683451 acttctccacacataatgtgtgtgaatctaaccac 7683485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 27227307 - 27227265
Alignment:
Q  196 gattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||||||||||||||||| |||||||||| |||||||| ||||    
T  27227307 gattccccacttctccacacataatgtgtttgaatctagccac 27227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 37307716 - 37307766
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    |||| |||||||||||||||||||||  ||||||||| |||||||| ||||    
T  37307716 gaactccggattccccacttctccacaaataatgtgtttgaatctagccac 37307766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 5808435 - 5808398
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtg 225  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  5808435 gaaccccggattcctcacttctccacacataatgtgtg 5808398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 13054652 - 13054697
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatcta 233  Q
    ||||||| |||| ||||||||||||| ||||||||||| |||||||    
T  13054652 gaaccccagatttcccacttctccacacataatgtgtgcgaatcta 13054697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 24250197 - 24250152
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatcta 233  Q
    |||||| |||||| |||||| ||||| |||||||||||||||||||    
T  24250197 gaaccctggattctccacttttccacacataatgtgtgtgaatcta 24250152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 41780525 - 41780566
Alignment:
Q  197 attccccacttctccacgcataatgtgtgtgaatctaaccac 238  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  41780525 attcctcacttctacacacataatgtgtgtgaatctaaccac 41780566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 47684538 - 47684493
Alignment:
Q  188 gaaccccggattccccacttctccacgcataatgtgtgtgaatcta 233  Q
    |||||||||||| || |||||||||  |||||||||||||||||||    
T  47684538 gaaccccggatttcctacttctccatacataatgtgtgtgaatcta 47684493  T

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