View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_28 (Length: 379)
Name: NF16123_low_28
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 19962542 - 19962880
Alignment:
| Q |
22 |
aaattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19962542 |
aaattcgccattacaagtaaagtacagtggatggagaatacagccaaagttacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaa |
19962641 |
T |
|
| Q |
122 |
tctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19962642 |
tctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggt |
19962741 |
T |
|
| Q |
222 |
gttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagatataaaggtttgttttggttactctcttttgggtaattctat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19962742 |
gttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagatataaaggtttgttttggttactctcttttgggtgattctat |
19962841 |
T |
|
| Q |
322 |
ttctacccctcttttgaacagtgaacaagaagcagaagc |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
19962842 |
ttctacccctcttttgaacagtgaacaagaagcagaagc |
19962880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 353
Target Start/End: Complemental strand, 20027860 - 20027530
Alignment:
| Q |
23 |
aattcgccattacaagtaaagtacagtggatggagaatacaaccaaagttacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaat |
122 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20027860 |
aattcgccattacaagtaaagtacaatggatggagaatacagccaaagttacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaat |
20027761 |
T |
|
| Q |
123 |
ctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtg |
222 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20027760 |
ctttatggatcaaaactggaatataccatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgatgcttcaacttgctaatagatggtg |
20027661 |
T |
|
| Q |
223 |
ttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaagatataaaggtttgttttggttactctcttttgggtaattctatt |
322 |
Q |
| |
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|||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20027660 |
ttccaagaccaacacctttgtgttcccttggggagaatcaacaatcacattggaagatataaaggtttgttttggttactctcttttgggtgattctatt |
20027561 |
T |
|
| Q |
323 |
tctacccctcttttgaacagtgaacaagaag |
353 |
Q |
| |
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|| |||||||||||||||||||||||||||| |
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| T |
20027560 |
tccacccctcttttgaacagtgaacaagaag |
20027530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 79 - 357
Target Start/End: Complemental strand, 20020989 - 20020711
Alignment:
| Q |
79 |
agaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatc |
178 |
Q |
| |
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||||||||| || ||||||| |||||| |||||||||||||| | ||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
20020989 |
agaatggaagaaatgggtcaacaaattaagaccaaagtttgaatttctatggatcaaaactggaatataccatgctatcacagcttctacttatgaaatc |
20020890 |
T |
|
| Q |
179 |
aaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaag |
278 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
20020889 |
aaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgtgttcccttggggagaatcaacaatcacattggaag |
20020790 |
T |
|
| Q |
279 |
atataaaggtttgttttggttactctcttttgggtaattctatttctacccctcttttgaacagtgaacaagaagcaga |
357 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
20020789 |
atataaaggtttgttttggttactctcttttgggtgattctatttctaaacctcttgagaacagtgaacaagaagcaga |
20020711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 80 - 353
Target Start/End: Original strand, 19967290 - 19967563
Alignment:
| Q |
80 |
gaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatca |
179 |
Q |
| |
|
|||||||| || ||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |
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| T |
19967290 |
gaatggaagaaatgggtcaacaaattacgaccaaagtttgaatttttatggatcaaaactggaatataccatgctatcacagcttctacttatgaaatca |
19967389 |
T |
|
| Q |
180 |
aaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattggaaga |
279 |
Q |
| |
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||||| |||||| |||||| |||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
19967390 |
aaaggaatgatgctttgatccttcaacttgctgatagatggtgttccaagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaaga |
19967489 |
T |
|
| Q |
280 |
tataaaggtttgttttggttactctcttttgggtaattctatttctacccctcttttgaacagtgaacaagaag |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
19967490 |
tataaaggtttgttttggttactctcttttgggtgattctatttccacccctcttttgaacagtgaacaagaag |
19967563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 14856545 - 14856422
Alignment:
| Q |
135 |
aaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaa |
234 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
14856545 |
aaactggaatatatcatgcaatcacagcttctacttatgaaatcaaaagggatgatgattttattcttgaacttgctaatagatggtgttccaagaccaa |
14856446 |
T |
|
| Q |
235 |
tacttttgttttcccttggggaga |
258 |
Q |
| |
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||||||||| |||||||||||||| |
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|
| T |
14856445 |
tacttttgtgttcccttggggaga |
14856422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 14856933 - 14856869
Alignment:
| Q |
79 |
agaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa |
143 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
14856933 |
agaatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaattggaa |
14856869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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