View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_3 (Length: 753)

Name: NF16123_low_3
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_3
NF16123_low_3
[»] chr5 (3 HSPs)
chr5 (18-172)||(29585626-29585780)
chr5 (492-539)||(29615653-29615700)
chr5 (645-689)||(25725046-25725090)
[»] chr6 (2 HSPs)
chr6 (54-172)||(27879099-27879217)
chr6 (54-88)||(30986430-30986464)
[»] chr4 (5 HSPs)
chr4 (54-172)||(30950572-30950690)
chr4 (54-172)||(30945866-30945984)
chr4 (54-172)||(48697504-48697622)
chr4 (54-172)||(48702193-48702311)
chr4 (626-693)||(36164338-36164406)
[»] chr2 (2 HSPs)
chr2 (54-172)||(5199027-5199145)
chr2 (129-172)||(34614229-34614272)
[»] chr3 (1 HSPs)
chr3 (54-172)||(2817623-2817741)
[»] chr7 (1 HSPs)
chr7 (54-93)||(30234920-30234959)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 4e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 29585626 - 29585780
Alignment:
Q  18 actgatttgggatgatgtgtggaacaatggtacaaatagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29585626 actgatttgggatgatgtgtggaacaatggtacaaatagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcat 29585725  T
Q  118 agtaactttccatgtgaacataaaaattacatgccaacatgttttactgccatgt 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29585726 agtaactttccatgtgaacataaaaactacatgccaacatgttttactgccatgt 29585780  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 492 - 539
Target Start/End: Complemental strand, 29615700 - 29615653
Alignment:
Q  492 atttgattgaagaatgaagatgcatacacttgaaaatgatttagaaaa 539  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29615700 atttgattgaagaatgaagatgcatacacttaaaaatgatttagaaaa 29615653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 645 - 689
Target Start/End: Original strand, 25725046 - 25725090
Alignment:
Q  645 atgggtcattcaattttgtttttccttagtactagaatcttattt 689  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||    
T  25725046 atgggtcactcaattttgttttgccttagtactagcatcttattt 25725090  T

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Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 27879099 - 27879217
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  27879099 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgcca 27879198  T
Q  154 acatgttttactgccatgt 172  Q
    |||||||||||||||||||    
T  27879199 acatgttttactgccatgt 27879217  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 30986464 - 30986430
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcattta 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  30986464 tagtgaaagagccatgccccaaccaattacattta 30986430  T

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Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 30950572 - 30950690
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  30950572 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgcca 30950671  T
Q  154 acatgttttactgccatgt 172  Q
    |||||||||||||||||||    
T  30950672 acatgttttactgccatgt 30950690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 30945866 - 30945984
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  30945866 tagtgaaagagccatgccccaaccaattgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgcca 30945965  T
Q  154 acatgttttactgccatgt 172  Q
    |||||||||||||||||||    
T  30945966 acatgttttactgccatgt 30945984  T

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Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 48697504 - 48697622
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  48697504 tagtgaaagagccatgccccaaccaattgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgcca 48697603  T
Q  154 acatgttttactgccatgt 172  Q
    |||||||||||||||||||    
T  48697604 acatgttttactgccatgt 48697622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 48702193 - 48702311
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  48702193 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgcca 48702292  T
Q  154 acatgttttactgccatgt 172  Q
    |||||||||||||||||||    
T  48702293 acatgttttactgccatgt 48702311  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 626 - 693
Target Start/End: Original strand, 36164338 - 36164406
Alignment:
Q  626 attagacaccaaat-acatgatgggtcattcaattttgtttttccttagtactagaatcttatttgtct 693  Q
    |||||||||||||| ||||||||||||||| ||||||||||| | |||||| ||| |||||||||||||    
T  36164338 attagacaccaaatgacatgatgggtcatttaattttgttttgcattagtattagcatcttatttgtct 36164406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 5199027 - 5199145
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  5199027 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgcca 5199126  T
Q  154 acatgttttactgccatgt 172  Q
    |||||||||||||||||||    
T  5199127 acatgttttactgccatgt 5199145  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 34614229 - 34614272
Alignment:
Q  129 atgtgaacataaaaattacatgccaacatgttttactgccatgt 172  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||    
T  34614229 atgtaaacatagaaattacatgctaacatgttttactgccatgt 34614272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 2817623 - 2817741
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaattttgcatagtaactttccatgtgaacataaaaattacatgcca 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  2817623 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaacttcccatgtgaacatagaaattacatgcca 2817722  T
Q  154 acatgttttactgccatgt 172  Q
    |||| ||||||||||||||    
T  2817723 acatattttactgccatgt 2817741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 30234959 - 30234920
Alignment:
Q  54 tagtgaaagagccatgccccaaccaattgcatttatggca 93  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30234959 tagtgaaagagccatgccccaaccaattacatttatggca 30234920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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