View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_32 (Length: 352)
Name: NF16123_low_32
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 2914650 - 2914979
Alignment:
| Q |
3 |
ttgaataaaaagttagtgtttcacgcaattattctacggagcaacataacatatatatgtgtaacaaacaaccttcggtcctttttgtcttgtgttagag |
102 |
Q |
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| T |
2914650 |
ttgaataaaaagttagtgtttcacgcaattattctacggagcagcataacatat--atgtgtaagaaacaaccttcggtcctttttgtcttgtgttagag |
2914747 |
T |
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| Q |
103 |
tgcatgtttgattcttcaaaaatggtagaatccattttgattcctgattatataaatgcaatatcacatgcgttcagaacattatctgcatgttttccac |
202 |
Q |
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| T |
2914748 |
tgcatgtttgattcttcaaaaatggtagaatccattttgattcctgattatataaatgcaatatcacatgcgttcagaacattatctgcatgttttccac |
2914847 |
T |
|
| Q |
203 |
ttttagaggaaaatcataaagcaactttttctttgattttctgtatatttctcattctttgcaaataatacaactcatagtcctgctccataattacgag |
302 |
Q |
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| T |
2914848 |
ttttagaggaaaatcataaagcaactttttctttgattttctgtatatttctcattctttgcaaataatacaactcatagtcctgctccattattacgag |
2914947 |
T |
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| Q |
303 |
taatcacctaaatggaaattaatggatagtgg |
334 |
Q |
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| T |
2914948 |
taatcacctaaatggaaattaatggatagtgg |
2914979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 272
Target Start/End: Original strand, 2920230 - 2920421
Alignment:
| Q |
81 |
tcctttttgtcttgt---gttagagtgcatgtttgattcttcaaaaatggtagaatccattttgattcctgattatataaatgcaatatcacatgcgttc |
177 |
Q |
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| T |
2920230 |
tcctttttgtcttgttgagttagagtgcatgtgtgattcctcactaatggtagaatccagtttgattcc---ttatataaatgca--accccatgggttc |
2920324 |
T |
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| Q |
178 |
agaacattatctgcatgttttccacttttagag-gaaaatcataaagcaactttttctttgattttctgta--tatttctcattctttgcaaataata |
272 |
Q |
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| T |
2920325 |
agaacaatagctttatgttttctatttttagagtaaaaatcataaaccaac-gtatctttcattctctatatgtatttctcattatttgcaaataata |
2920421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 2920459 - 2920510
Alignment:
| Q |
283 |
tcctgctccataattacgagtaatcacctaaatggaaattaatggatagtgg |
334 |
Q |
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| T |
2920459 |
tcctgctccataattacaagcaattacctaaatagaaattaatagatagtgg |
2920510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 2811478 - 2811450
Alignment:
| Q |
256 |
attctttgcaaataatacaactcatagtc |
284 |
Q |
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| T |
2811478 |
attctttgcaaataatacaactcatagtc |
2811450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 2958100 - 2958148
Alignment:
| Q |
178 |
agaacattatctgcatgttttccacttttagaggaaaatcataaagcaa |
226 |
Q |
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| T |
2958100 |
agaacaatatctacatgttttccatttttagtgtaaaatcataaagcaa |
2958148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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