View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_33 (Length: 347)
Name: NF16123_low_33
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 51320289 - 51320528
Alignment:
| Q |
19 |
atcattacattcccaaacatgtataaaaaggatccaataaaatttgacttaaaattaactaaacaaacgttgttgatagatgatgaggtcgcactacaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320289 |
atcattacattcccaaacatgtataaaaaggatccaataaaatttgacttaaa-ttaactaaacaaacgttgttgatagatgatgaggtcgcactacaaa |
51320387 |
T |
|
| Q |
119 |
aatagacatcaaggttcctgtgaaatatatatatagaaatacatacatacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgatgag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320388 |
aatagacatcaaggttcctgtgaaatatatagata----tac----atacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgatgag |
51320479 |
T |
|
| Q |
219 |
ggaatagtaattgaattgggatttgacataattaaactctggtggtatc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320480 |
ggaatagtaattgaattgggatttgacataattaaactctggtggtatc |
51320528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 51320553 - 51320609
Alignment:
| Q |
280 |
caatgaatctaaatgatggcccgttaagttatttgtacctaatgaatagtgtttctt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320553 |
caatgaatctaaatgatggcccgttaagttatttgtacctaatgaatagtgtttctt |
51320609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University