View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_34 (Length: 344)

Name: NF16123_low_34
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_34
NF16123_low_34
[»] chr2 (3 HSPs)
chr2 (1-338)||(9361885-9362212)
chr2 (1-199)||(5076632-5076833)
chr2 (1-199)||(28495598-28495799)
[»] chr1 (4 HSPs)
chr1 (12-289)||(45237360-45237638)
chr1 (275-338)||(45237655-45237718)
chr1 (12-199)||(17287832-17288020)
chr1 (281-333)||(19039262-19039314)
[»] chr8 (4 HSPs)
chr8 (172-338)||(16468570-16468736)
chr8 (1-111)||(16468735-16468847)
chr8 (281-337)||(8813528-8813584)
chr8 (281-333)||(44071388-44071440)
[»] chr4 (10 HSPs)
chr4 (1-337)||(54568412-54568752)
chr4 (87-333)||(53745287-53745533)
chr4 (1-199)||(26626233-26626434)
chr4 (12-207)||(50938451-50938647)
chr4 (84-207)||(22206018-22206141)
chr4 (87-207)||(8649754-8649874)
chr4 (87-207)||(8661561-8661681)
chr4 (281-333)||(23137517-23137569)
chr4 (281-333)||(22209291-22209343)
chr4 (281-333)||(22206216-22206268)
[»] chr7 (6 HSPs)
chr7 (1-294)||(14591542-14591840)
chr7 (3-294)||(16011135-16011431)
chr7 (166-337)||(37446804-37446975)
chr7 (281-336)||(25839361-25839416)
chr7 (289-333)||(4656262-4656306)
chr7 (140-196)||(25839420-25839476)
[»] chr6 (11 HSPs)
chr6 (3-294)||(34416825-34417121)
chr6 (1-207)||(8497854-8498065)
chr6 (145-336)||(27771045-27771234)
chr6 (102-333)||(24845670-24845900)
chr6 (2-132)||(27119451-27119584)
chr6 (252-334)||(24691738-24691820)
chr6 (136-317)||(23389152-23389335)
chr6 (281-337)||(27118798-27118854)
chr6 (64-202)||(32649639-32649777)
chr6 (252-299)||(32649826-32649873)
chr6 (79-123)||(23384452-23384497)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-207)||(414207-414416)
[»] chr5 (4 HSPs)
chr5 (145-337)||(12873895-12874087)
chr5 (2-207)||(14988296-14988504)
chr5 (281-333)||(16056592-16056644)
chr5 (293-334)||(11465280-11465321)
[»] chr3 (2 HSPs)
chr3 (17-207)||(26701028-26701212)
chr3 (281-333)||(33813577-33813629)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 9361885 - 9362212
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttatagttgcaatttcaagaatcacttcaaaacaaggttta 98  Q
    ||||||||||||||  ||||||||||||||| |||||||  || |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  9361885 ggcaatcacttaaaaatgttggaatttatttgtcaagtcgcgtctttttgcatggtcagttgtagttgcaatttcaagagtcacttcaaaacaaggttta 9361984  T
Q  99 aaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttca 198  Q
    |||||||||||||||||||||||||||||||||| ||            |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  9361985 aaatactaatcgttgatggagatgggagagaatacta------------atgttgtttatcacgaagtctttcgtaatatatcttgatgattaaagttca 9362072  T
Q  199 accctttttcatgtgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaactatata 298  Q
    | |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  9362073 aacctttttcatatgtattctatcatctatttttgttgttatggttattgtataagtgaacatgttttttaatttttatatgacttctattaactatata 9362172  T
Q  299 tatttacattattgcgacttattcgtttaacttcttctca 338  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  9362173 tatttacattgttgcgacttattcgtttaacttcttctca 9362212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5076632 - 5076833
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt 97  Q
    ||||||||||||||  |||||||||||||||  | ||||||||||| |  |||||| | || || |||||||| |||||| |||||||||| ||| | ||    
T  5076632 ggcaatcacttaaaactgttggaatttatttgccgagtcctgtgttctcacatggtcaattgtacgttgcaatctcaagagtcacttcaaatcaatgatt 5076731  T
Q  98 aaaa-tactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
    |||| |||||||||||||||||||||  |||||||| |   |||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  5076732 aaaaatactaatcgttgatggagatga-agagaatactgatacgacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttgatgattaaagtt 5076830  T
Q  197 caa 199  Q
    |||    
T  5076831 caa 5076833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28495799 - 28495598
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt 97  Q
    ||||||||||||||  ||||| |||||||||  | |||| |||||| | ||||||| |||| || | ||||||||| ||  ||||||||| |||  ||||    
T  28495799 ggcaatcacttaaaaatgttgaaatttattttccgagtcatgtgttctcgcatggtcagttgtacgctgcaatttctagggtcacttcaagacagagttt 28495700  T
Q  98 -aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
     |||||||||||||||||||||||||| ||||| || |   |||||  ||||||||||||||||| |||||||| ||||| |||||||||| |||| |||    
T  28495699 gaaaatactaatcgttgatggagatgg-agagagtactgatacgacgtcaaatgttgtttatcacgaagtctttcgtaatgtatcttgatggttaatgtt 28495601  T
Q  197 caa 199  Q
    |||    
T  28495600 caa 28495598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 45237360 - 45237638
Alignment:
Q  12 aaatgttggaatttatttatcaagtcctgtgtttttgcatggttagttatagttgcaatttcaagaatcacttcaaaacaaggtttaaaatactaatcgt 111  Q
    |||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45237360 aaatgttggaatttatttgtcaagtcctgtatttttgcatggtcagttgtagttgcaatttcaagagtcacttcaaaacaaggtttaaaatactaatcgt 45237459  T
Q  112 tgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaaccctttttcatg 211  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45237460 tgatggagatgggagagaatactacaacgacctcaaatgttgtttatcacgaagtctttcgtaatatatcttgatgattaaagttcaaccctttttcatg 45237559  T
Q  212 tgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatg-ttttttaggttttatatgacttctatt 289  Q
    |||||| ||||||||||||||||||| ||| |||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  45237560 tgtattttatcatctatttttgttgttatgtttattgtataagtgaacatgtttttttaatttttatatgacttctatt 45237638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 45237655 - 45237718
Alignment:
Q  275 tatatgacttctattaactatatatatttacattattgcgacttattcgtttaacttcttctca 338  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45237655 tatatgacttctatttactatatatatttacattattgcgacttattcgtttaacttcttctca 45237718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 17287832 - 17288020
Alignment:
Q  12 aaatgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt-aaaatactaatc 109  Q
    |||||||||||||||||   | ||||||||||| | ||||||| |||| || ||||||||||| ||  ||||||||| ||| ||||| ||||||||||||    
T  17287832 aaatgttggaatttattcgccgagtcctgtgttctcgcatggtcagttgtacgttgcaatttccagggtcacttcaagacagggtttgaaaatactaatc 17287931  T
Q  110 gttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaa 199  Q
     ||||||||||| | ||||| || |   |||||| ||||||||||||||||| |||||||| ||||| ||| |||||| |||| ||||||    
T  17287932 attgatggagat-gaagagagtactgatacgacctcaaatgttgtttatcacgaagtctttcgtaatgtattttgatggttaatgttcaa 17288020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 19039314 - 19039262
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||||||| ||||||| ||||||||||||||| | ||||| |||| ||||    
T  19039314 acttctattaaatatatatgtttacattattgcgattgattcgattaatttct 19039262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 172 - 338
Target Start/End: Complemental strand, 16468736 - 16468570
Alignment:
Q  172 gtaatatatcttgatgattaaagttcaaccctttttcatgtgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatgttttttagg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16468736 gtaatatatcttgatgattaaagttcaaccctttttcatgtgtattctatcatctatttttgttgttatggttatcgtataagtgaacatgttttttagg 16468637  T
Q  272 ttttatatgacttctattaactatatatatttacattattgcgacttattcgtttaacttcttctca 338  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  16468636 ttttatatgacttctattaactatatatatttacattattgcaacttattcgtttaaattcttctca 16468570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16468847 - 16468735
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttatagttgcaatttcaagaatcacttcaaaacaaggttta 98  Q
    ||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  16468847 ggcaatcacttaaaaatgttggaatttatttgtcaaatcctgtgtttttgcatggtcagttgtagttgcaatttcaagagtcacttcaaaacaaggttta 16468748  T
Q  99 aaatactaatcgt 111  Q
    |||||||||||||    
T  16468747 aaatactaatcgt 16468735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 8813528 - 8813584
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttcttctc 337  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  8813528 acttctattaactatatatgtttacattgttgcgacttattcgtttaacttcttctc 8813584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 44071440 - 44071388
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||||||| ||||||| |||||||| |||||||  ||||| |||||||||    
T  44071440 acttctattaattatatatgtttacatttttgcgaccaattcgattaacttct 44071388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 54568752 - 54568412
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt 97  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||| ||||||| |||| || |||||||| |||||| ||| |||||||||||| ||    
T  54568752 ggcaatcacttaaaagtgttggaatttatttgtcgagtcctgtgttttcgcatggtcagttgtacgttgcaatctcaagattcatttcaaaacaaggatt 54568653  T
Q  98 -aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
     |||||||||||||||||||||||||| | ||||||||   | |||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  54568652 gaaaatactaatcgttgatggagatggaa-agaatattgatatgacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttgatgattaaagtt 54568554  T
Q  197 ca-accctttttcatgtgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaactat 295  Q
    || ||  |||||  | ||||| ||| ||| |  ||||||||  || ||| ||||| ||| |||||||||||| |  |||  ||  |||||||||||||||    
T  54568553 cacacttttttttttatgtatgctaccatttcattttgttgctattgttgtcgtagaagggaacatgtttttaaattttgttaaaacttctattaactat 54568454  T
Q  296 atatatttacattattgcgacttattcgtttaacttcttctc 337  Q
    |||| |||||| | ||| ||||||||||||||||||||||||    
T  54568453 atatgtttacagtgttgtgacttattcgtttaacttcttctc 54568412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 333
Target Start/End: Complemental strand, 53745533 - 53745287
Alignment:
Q  87 aaacaaggtttaaaa-tactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttga 185  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||| | ||  || ||| ||||||||||||||||| |||||||| ||||| ||||||||    
T  53745533 aaacaaggtttgaaactactaatcgttgatggagatgg-agagaacactaatacaacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttga 53745435  T
Q  186 tgattaaagttcaaccctttttcatgtgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttc 285  Q
    ||||||| |||||| |||||||  | ||||| ||| ||| || |||||||   || ||| || || ||| |||||| ||||| |  | || ||  | |||    
T  53745434 tgattaatgttcaaacctttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttc 53745335  T
Q  286 tattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    |||||||||||||||||||||||| ||||||| ||| | |||||||||    
T  53745334 tattaactatatatatttacattaatgcgactgatttgattaacttct 53745287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26626434 - 26626233
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt 97  Q
    ||||||||||||||  ||||||||||||||| || ||||  ||||| | ||||||| |||| || ||||||||||| ||| ||||||||| ||| |||||    
T  26626434 ggcaatcacttaaaaatgttggaatttatttttcgagtctcgtgttctcgcatggtcagttgtacgttgcaatttccagagtcacttcaagacagggttt 26626335  T
Q  98 -aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
     ||||||||||||||| |||||||||| ||||| || |   |||||| |||||||||||||| || |||| ||| ||||| |||||||||| |||| |||    
T  26626334 gaaaatactaatcgttaatggagatgg-agagagtactgatacgacctcaaatgttgtttattacgaagtttttcgtaatgtatcttgatggttaatgtt 26626236  T
Q  197 caa 199  Q
    |||    
T  26626235 caa 26626233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 50938647 - 50938451
Alignment:
Q  12 aaatgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt-aaaatactaatc 109  Q
    |||||||||||||||||| || ||||||||||| |  |||||| |||| || ||||||||||| ||| |||| |||||||||| ||| ||||||||||||    
T  50938647 aaatgttggaatttatttgtcgagtcctgtgttctcacatggtcagttgtacgttgcaatttccagagtcacgtcaaaacaagatttgaaaatactaatc 50938548  T
Q  110 gttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaacccttttt 207  Q
    |||||||||||| |||||||  | |   || ||| ||||| ||||||||||  || ||||| ||||| |||||| ||| |||| |||||| |||||||    
T  50938547 gttgatggagat-ggagagagcactgatacaacctcaaatattgtttatcatgaattctttcgtaatgtatcttaatggttaatgttcaaaccttttt 50938451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 22206018 - 22206141
Alignment:
Q  84 tcaaaacaaggttt-aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatct 182  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||| | ||  | |||| ||||||||||||||||| |||||||| ||||| |||||    
T  22206018 tcaaaacaaggtttgaaaatactaatcgttgatggagatgg-agagaacactaataagacctcaaatgttgtttatcacgaagtctttcgtaatgtatct 22206116  T
Q  183 tgatgattaaagttcaacccttttt 207  Q
    ||||| |||| ||| || |||||||    
T  22206117 tgatggttaatgttgaaaccttttt 22206141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 8649874 - 8649754
Alignment:
Q  87 aaacaaggtttaaaa-tactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttga 185  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||| | ||  || ||| ||||||||||||||||| |||||||| ||||| ||||||||    
T  8649874 aaacaaggtttgaaactactaatcgttgatggagatgg-agagaacactaatacaacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttga 8649776  T
Q  186 tgattaaagttcaacccttttt 207  Q
    || |||| |||||| |||||||    
T  8649775 tggttaatgttcaaaccttttt 8649754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 8661681 - 8661561
Alignment:
Q  87 aaacaaggtttaaaa-tactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttga 185  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||| | ||  || ||| ||||||||||||||||| |||||||| ||||| ||||||||    
T  8661681 aaacaaggtttgaaactactaatcgttgatggagatgg-agagaacactaatacaacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttga 8661583  T
Q  186 tgattaaagttcaacccttttt 207  Q
    || |||| |||||| |||||||    
T  8661582 tggttaatgttcaaaccttttt 8661561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 23137569 - 23137517
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  23137569 acttctattaactatatatatttacattattgcgattaattcgattaacttct 23137517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 22209291 - 22209343
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| |||||||||    
T  22209291 acttctattaactatatatgtttacatttttgcgactgattcgattaacttct 22209343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 22206216 - 22206268
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    |||||||| |||||||||| ||||||||||||||| | ||||| |||| ||||    
T  22206216 acttctatcaactatatatgtttacattattgcgattgattcgattaatttct 22206268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 14591542 - 14591840
Alignment:
Q  1 ggcaatcacttaa--atgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt 97  Q
    |||||||||||||  ||||||||||||||||  |||||||||||||||  |||||| |||| || |||||||| |||||| |||||||||||||||||||    
T  14591542 ggcaatcacttaagaatgttggaatttatttgccaagtcctgtgttttcacatggtcagttgtacgttgcaatctcaagagtcacttcaaaacaaggttt 14591641  T
Q  98 -aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
     ||||| |||||||||||||||||||| ||||| || |   |||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||| |||||    
T  14591642 gaaaattctaatcgttgatggagatgg-agagactactgatacgacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttgatcattcaagtt 14591740  T
Q  197 caaccctttttcatgtgtattctatcatctatttttg--ttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaacta 294  Q
    ||| | |||||||  ||||||||   |||||||||||  ||||||||||||||||| |  ||||||||  |||||  ||||| ||||||| |||||||||    
T  14591741 caatcttttttcacatgtattcttcaatctatttttgtattgtaatggttatcgtagatttgaacatggcttttaaattttacatgacttttattaacta 14591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 294
Target Start/End: Original strand, 16011135 - 16011431
Alignment:
Q  3 caatcacttaa--atgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt-a 98  Q
    |||||||||||  ||||||||||||||||  ||| ||||||||||| ||||||| |||| || |||||||| |||||| ||||||||||||||||||| |    
T  16011135 caatcacttaagaatgttggaatttatttgccaactcctgtgttttcgcatggtcagttgtacgttgcaatctcaagagtcacttcaaaacaaggtttga 16011234  T
Q  99 aaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttca 198  Q
    |||| |||||||||||||||||||| ||||| || |   |||||| ||||||||||||||||  |||||||| ||||| ||||||||| ||| |||||||    
T  16011235 aaattctaatcgttgatggagatgg-agagactactgatacgacctcaaatgttgtttatcatgaagtctttcgtaatgtatcttgatcattgaagttca 16011333  T
Q  199 accctttttcatgtgtattctatcatctatttttg--ttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaacta 294  Q
    | | |||||||  ||||||||   |||||||||||  ||||||||||||||||| |  ||||||||  |||||  ||||| ||||||| |||||||||    
T  16011334 atcttttttcacatgtattcttcaatctatttttgtattgtaatggttatcgtagatttgaacatggcttttaaattttacatgacttttattaacta 16011431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 37446975 - 37446804
Alignment:
Q  166 tcttttgtaatatatcttgatgattaaagttcaaccctttttcatgtgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatgttt 265  Q
    ||||| ||||| |||||||| ||||||||||||| || ||||  | ||||| ||| |||    ||||||||  || ||| ||||| ||| |||||| |||    
T  37446975 tctttcgtaatgtatcttgaggattaaagttcaaaccatttttttatgtatgctaccattccattttgttgctattgttgtcgtagaagggaacatattt 37446876  T
Q  266 tttaggttttatatgacttctattaactatatatatttacattattgcgacttattcgtttaacttcttctc 337  Q
    || |  |||  ||  |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  37446875 ttaaaatttgttaaaacttctattaacgatatatgtttacattgttgcgacttattcgtttaacttcttctc 37446804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 25839416 - 25839361
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttcttct 336  Q
    |||||||| |||||||||| |||||||||||||||||||||  |||||||||||||    
T  25839416 acttctatcaactatatatgtttacattattgcgacttatttatttaacttcttct 25839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 4656306 - 4656262
Alignment:
Q  289 taactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||||||| |||| ||| |||||| |||||||||||||||||    
T  4656306 taactatatatgtttaaattgttgcgaattattcgtttaacttct 4656262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 25839476 - 25839420
Alignment:
Q  140 gaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
    |||| ||||||||||||||||| ||||||||  |||| ||| |||| ||||||||||    
T  25839476 gacctcaaatgttgtttatcacgaagtctttcataatgtattttgacgattaaagtt 25839420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 34417121 - 34416825
Alignment:
Q  3 caatcacttaa--atgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt-a 98  Q
    |||||||||||  ||||||||||||||||  | ||||||||||||| ||||||| |||| || |||||||| |||||| ||||||| ||||||||||| |    
T  34417121 caatcacttaagaatgttggaatttatttgcccagtcctgtgttttcgcatggtcagttgtacgttgcaatctcaagagtcacttcgaaacaaggtttga 34417022  T
Q  99 aaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttca 198  Q
    |||| |||||||||||||||||||| ||||| || |   |||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||| |||||||    
T  34417021 aaattctaatcgttgatggagatgg-agagactactgatacgacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttgatcattcaagttca 34416923  T
Q  199 accctttttcatgtgtattctatcatctatttttg--ttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaacta 294  Q
    | | |||||||  ||||||||   |||||||||||  ||||||||||||||||| |  ||||||||  |||||  ||||| ||||||| |||||||||    
T  34416922 atcatttttcaaatgtattcttcaatctatttttgtattgtaatggttatcgtagatttgaacatgacttttaaattttacatgacttttattaacta 34416825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 8498065 - 8497854
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcat--ggttagttata-gttgcaatttcaagaatcacttcaaaacaaggt 95  Q
    ||||||||||||||  |||||||||||||||  | ||||||||||| | ||||  ||| |||| || ||||||||||| ||| |||||||||||||| ||    
T  8498065 ggcaatcacttaaaaatgttggaatttatttgccgagtcctgtgttctcgcatatggtcagttgtacgttgcaatttccagagtcacttcaaaacaatgt 8497966  T
Q  96 tt-aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaag 194  Q
    || ||||||||||||||||||||||||||| ||||| |||   |||| | ||||||||||||||||| |||||||| ||||||||||||||| ||||| |    
T  8497965 ttgaaaatactaatcgttgatggagatggg-gagaacattgatacgatctcaaatgttgtttatcacgaagtctttcgtaatatatcttgataattaatg 8497867  T
Q  195 ttcaacccttttt 207  Q
    ||||| |||||||    
T  8497866 ttcaaaccttttt 8497854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 145 - 336
Target Start/End: Original strand, 27771045 - 27771234
Alignment:
Q  145 caaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaaccctttttcatgtgtattctatcatctatttttgttgtaatggtt 244  Q
    ||||||||||||||||  |||| |||| |||| |||||||||||||||||||||| | ||||||    ||||  ||||||||  ||||||||  || |||    
T  27771045 caaatgttgtttatcatgaagt-ttttataatgtatcttgatgattaaagttcaaacatttttctgaggtatattatcatctcattttgttgctattgtt 27771143  T
Q  245 atcgtataagtgaacatgttttttaggttttatatgacttctattaactatatatatttacattattgcgacttattcgtttaacttcttct 336  Q
     ||||| ||| |||||| ||||  |  ||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  27771144 gtcgtagaagggaacatattttaaatcttt-ataagacttctattaactatatatgtttacattgttgcgacttattcgtttaacttcttct 27771234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 24845900 - 24845670
Alignment:
Q  102 tactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaacc 201  Q
    |||||||||||||||||||| | |||||| | ||  || ||| ||||||||||||||||| |||||||| ||||| |||||||||| |||| |||||| |    
T  24845900 tactaatcgttgatggagatcg-agagaacactaatacaacctcaaatgttgtttatcacgaagtctttcgtaatgtatcttgatggttaatgttcaaac 24845802  T
Q  202 ctttttcatgtgtattctatcatctatttttgttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaactatatatat 301  Q
    ||||||  | ||||| ||| ||| || |||||||    | ||| || || ||| |||||| ||||| |  | || ||  | ||||||||||||||||| |    
T  24845801 ctttttgttatgtatgctaccatttaattttgttccttttgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgt 24845702  T
Q  302 ttacattattgcgacttattcgtttaacttct 333  Q
    |||||||| ||||||| ||||| |||||||||    
T  24845701 ttacattaatgcgactgattcgattaacttct 24845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 27119584 - 27119451
Alignment:
Q  2 gcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaagg-ttt 97  Q
    |||||||||||||  ||||||||||||||| ||  |||||||||| | ||||||| |||| || |||||||| |||||| |||||||||||||||| ||     
T  27119584 gcaatcacttaaaagtgttggaatttatttgtcgggtcctgtgttctcgcatggtcagttgtacgttgcaatctcaagagtcacttcaaaacaaggattg 27119485  T
Q  98 aaaatactaatcgttgatggagatgggagagaata 132  Q
    |||| |||||||||| |||||||| ||||||||||    
T  27119484 aaaacactaatcgtttatggagat-ggagagaata 27119451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 24691738 - 24691820
Alignment:
Q  252 aagtgaacatgttttttaggttttatatgacttctattaactatatatatttacattattgcgacttattcgtttaacttctt 334  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||| || ||||| |||||||||||| |||||| |||||    
T  24691738 aagtgaacatgtttttaaatttttatatgacttctattaactatatatgttcacattgttgcgacttatttgtttaagttctt 24691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 317
Target Start/End: Original strand, 23389152 - 23389335
Alignment:
Q  136 caacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaaccctttt--tcatgtgtattctatcatctatttttg 233  Q
    |||||||| ||||||||||||||||| |||||||| | ||| |||||||||| |||| |||||| | ||||  | || ||||| ||| ||| |  |||||    
T  23389152 caacgacctcaaatgttgtttatcacgaagtctttcgcaatgtatcttgatggttaatgttcaaacatttttgttatatgtatgctaccatttcattttg 23389251  T
Q  234 ttgtaatggttatcgtataagtgaacatgttttttaggttttatatgacttctattaactatatatatttacattattgcgact 317  Q
    ||   || ||| || |||||| |||||| ||||| |  | |||||  |||||| |||||||||||| |||||||||||||||||    
T  23389252 tttctattgttgtcttataagggaacatatttttaaattgttataaaacttcttttaactatatatgtttacattattgcgact 23389335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 27118854 - 27118798
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttcttctc 337  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||    
T  27118854 acttctattaactatatatgtttacattgttgcgactcattcgtttaacttcttctc 27118798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 32649639 - 32649777
Alignment:
Q  64 ttgcaatttcaagaatcacttcaaaaca-aggtttaaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcaca 162  Q
    |||||||||||||| ||||||||||||| || || || |||||||||||||||| |||| ||||| |||   || ||| || |  ||||||||||||| |    
T  32649639 ttgcaatttcaagagtcacttcaaaacacagtttgaagatactaatcgttgatgaagat-ggagacaatgccactacggcctccgatgttgtttatcata 32649737  T
Q  163 aagtcttttgtaatatatcttgatgattaaagttcaaccc 202  Q
    |||| |||  |||| |||||||||||||||| ||||||||    
T  32649738 aagtatttcataatgtatcttgatgattaaaattcaaccc 32649777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 32649826 - 32649873
Alignment:
Q  252 aagtgaacatgttttttaggttttatatgacttctattaactatatat 299  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||    
T  32649826 aagtgaacatgtttttccttttttatatgacttctattaactatatat 32649873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 23384452 - 23384497
Alignment:
Q  79 tcacttcaaaacaaggttt-aaaatactaatcgttgatggagatgg 123  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||||    
T  23384452 tcacttcaaaacaaggtttgaaaatactgatcgttgaaggagatgg 23384497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 414207 - 414416
Alignment:
Q  1 ggcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt 97  Q
    ||||||||||||||  ||||||||||| |||  | |||||| |||| |  |||||| |||| || |||||||| |||||| |||||||||||||||| ||    
T  414207 ggcaatcacttaaaagtgttggaatttgtttgccgagtcctatgttctcacatggtcagttgtacgttgcaatctcaagagtcacttcaaaacaaggatt 414306  T
Q  98 a-aaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagtt 196  Q
    | ||||||||||||||||||||||||  |||||||| |   |||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  414307 agaaatactaatcgttgatggagatga-agagaatactgatacgacctcaaatgttgtttatcacgaagtctttggtaatgtatcttgatgattaaagtt 414405  T
Q  197 caacccttttt 207  Q
    ||| |||||||    
T  414406 caaaccttttt 414416  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 337
Target Start/End: Original strand, 12873895 - 12874087
Alignment:
Q  145 caaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaaccctttttcatgtgtattctatcatctatttttgttgtaatggtt 244  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||   ||||||    ||||  ||||||||  ||||||||  || |||    
T  12873895 caaatgttgtttatcatgaagtctttcgtaatgtatcttgatgattaaagttcaaatatttttctgaggtatattatcatctcattttgttgctattgtt 12873994  T
Q  245 atcgtataagtgaacatgttttttaggttttatatgacttctattaactatatatatttacattattgcgacttattcgtttaacttcttctc 337  Q
     ||||| ||| |||||| ||||| |   |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  12873995 gtcgtagaagggaacatatttttaaatctttataagacttctattaactatatatgtttacattgttgcgacttattcgtttaacttcttctc 12874087  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 14988296 - 14988504
Alignment:
Q  2 gcaatcacttaaa--tgttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt- 97  Q
    |||||||||||||  |||||||||||||||  | |||| |||||| | ||||| |||||| || ||||||||||| ||| |||||||||||||| ||||     
T  14988296 gcaatcacttaaaaatgttggaatttatttgccgagtcatgtgttctcgcatgattagttgtacgttgcaatttccagagtcacttcaaaacaatgtttg 14988395  T
Q  98 aaaatactaatcgttgatggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttc 197  Q
    |||||||||||||||||| ||||| ||||||||   ||  |||||| |||||||| || ||||| ||||||||  |||| |||||||||| |||| ||||    
T  14988396 aaaatactaatcgttgatagagat-ggagagaacgctaatacgacctcaaatgttattaatcacgaagtctttcataatgtatcttgatggttaatgttc 14988494  T
Q  198 aacccttttt 207  Q
    || |||||||    
T  14988495 aaaccttttt 14988504  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 16056644 - 16056592
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  16056644 acttctattaactatatatatttacattattgcgattgattcgattaacttct 16056592  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 11465321 - 11465280
Alignment:
Q  293 tatatatatttacattattgcgacttattcgtttaacttctt 334  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  11465321 tatatatgtttacattattgcgacttattcgtttaatttctt 11465280  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 26701212 - 26701028
Alignment:
Q  17 ttggaatttatttatcaagtcctgtgtttttgcatggttagttata-gttgcaatttcaagaatcacttcaaaacaaggttt-aaaatactaatcgttga 114  Q
    |||||||||||||  | |||| |||||| | ||||||| |||| || |||||||| ||||||  ||||| ||||||||| || |||||||||||| ||||    
T  26701212 ttggaatttatttgccgagtcatgtgttctcgcatggtcagttgtatgttgcaatctcaagagacacttgaaaacaaggattgaaaatactaatcattga 26701113  T
Q  115 tggagatgggagagaatattacaacgaccacaaatgttgtttatcacaaagtcttttgtaatatatcttgatgattaaagttcaacccttttt 207  Q
    ||||||| |||||||||| |   |||       || ||||||||||| ||| |||| ||||| ||| |||||||||||||||||| |||||||    
T  26701112 tggagat-ggagagaatactgatacg-------atcttgtttatcacgaagcctttcgtaatgtatattgatgattaaagttcaaaccttttt 26701028  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 33813629 - 33813577
Alignment:
Q  281 acttctattaactatatatatttacattattgcgacttattcgtttaacttct 333  Q
    ||||||| ||||||||||| ||||||| ||||||| | ||||| |||||||||    
T  33813629 acttctaataactatatatgtttacatgattgcgattgattcgattaacttct 33813577  T

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