View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_36 (Length: 339)

Name: NF16123_low_36
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_36
NF16123_low_36
[»] scaffold0265 (4 HSPs)
scaffold0265 (1-122)||(2632-2753)
scaffold0265 (1-122)||(7521-7642)
scaffold0265 (281-330)||(2912-2961)
scaffold0265 (281-330)||(7801-7850)
[»] chr1 (7 HSPs)
chr1 (1-122)||(21825168-21825289)
chr1 (281-330)||(21824960-21825009)
chr1 (280-330)||(21779294-21779344)
chr1 (282-316)||(8029640-8029674)
chr1 (282-316)||(8029915-8029949)
chr1 (8-57)||(21779001-21779050)
chr1 (282-314)||(8027136-8027168)
[»] chr5 (15 HSPs)
chr5 (1-122)||(20914146-20914269)
chr5 (1-120)||(20921792-20921911)
chr5 (280-330)||(20893559-20893609)
chr5 (280-330)||(20913939-20913989)
chr5 (282-325)||(20921584-20921627)
chr5 (282-316)||(27264780-27264814)
chr5 (282-316)||(27265053-27265087)
chr5 (282-316)||(28395889-28395923)
chr5 (282-316)||(31173247-31173281)
chr5 (282-316)||(31173520-31173554)
chr5 (5-57)||(20893190-20893242)
chr5 (62-122)||(20893271-20893330)
chr5 (282-314)||(27262321-27262353)
chr5 (282-314)||(31170754-31170786)
chr5 (282-314)||(41873894-41873926)
[»] chr4 (11 HSPs)
chr4 (280-330)||(43433036-43433086)
chr4 (282-316)||(25920890-25920924)
chr4 (282-316)||(54398069-54398103)
chr4 (282-316)||(22159152-22159186)
chr4 (282-316)||(22159425-22159459)
chr4 (282-316)||(23314706-23314740)
chr4 (282-316)||(51754584-51754618)
chr4 (282-314)||(22161931-22161963)
chr4 (282-314)||(23317480-23317512)
chr4 (62-122)||(43433265-43433324)
chr4 (282-314)||(50997575-50997607)
[»] chr7 (6 HSPs)
chr7 (282-316)||(5097744-5097778)
chr7 (282-316)||(24058701-24058735)
chr7 (280-316)||(24056946-24056982)
chr7 (282-316)||(5097467-5097501)
chr7 (282-316)||(39754550-39754584)
chr7 (282-314)||(5094972-5095004)
[»] chr6 (2 HSPs)
chr6 (282-316)||(13845671-13845705)
chr6 (282-316)||(13845946-13845980)
[»] chr3 (10 HSPs)
chr3 (282-316)||(37975460-37975494)
chr3 (282-316)||(3805778-3805812)
chr3 (282-316)||(33706904-33706938)
chr3 (282-316)||(37975734-37975768)
chr3 (282-316)||(44177967-44178001)
chr3 (282-316)||(44178240-44178274)
chr3 (282-316)||(44184653-44184687)
chr3 (282-316)||(44184929-44184963)
chr3 (282-314)||(44175472-44175504)
chr3 (282-314)||(44182173-44182205)
[»] chr2 (6 HSPs)
chr2 (282-316)||(36213680-36213714)
chr2 (282-316)||(2382218-2382252)
chr2 (282-316)||(2382491-2382525)
chr2 (282-316)||(40325306-40325340)
chr2 (282-314)||(36215351-36215383)
chr2 (282-314)||(40322838-40322870)
[»] chr8 (15 HSPs)
chr8 (282-313)||(27276119-27276150)
chr8 (282-316)||(414047-414081)
chr8 (282-316)||(414272-414306)
chr8 (282-316)||(1656712-1656746)
chr8 (282-316)||(1656985-1657019)
chr8 (282-316)||(6334653-6334687)
chr8 (282-316)||(6334926-6334960)
chr8 (282-316)||(14032716-14032750)
chr8 (282-316)||(14032990-14033024)
chr8 (282-316)||(36798263-36798297)
chr8 (282-316)||(37403916-37403950)
chr8 (282-314)||(416751-416783)
chr8 (282-314)||(6337431-6337463)
chr8 (282-314)||(36798538-36798570)
chr8 (282-314)||(36803444-36803476)
[»] scaffold0035 (3 HSPs)
scaffold0035 (282-316)||(80629-80663)
scaffold0035 (282-316)||(80902-80936)
scaffold0035 (282-314)||(83399-83431)


Alignment Details
Target: scaffold0265 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2632 - 2753
Alignment:
Q  1 tataacttaaccacttgacctatacttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaaggaaaa 100  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2632 tataacttaaccacttcaccaatatttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaagaaaaa 2731  T
Q  101 aacaaatttatatgtgtatatc 122  Q
    ||||||||||||||||||||||    
T  2732 aacaaatttatatgtgtatatc 2753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7521 - 7642
Alignment:
Q  1 tataacttaaccacttgacctatacttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaaggaaaa 100  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7521 tataacttaaccacttcaccaatatttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaagaaaaa 7620  T
Q  101 aacaaatttatatgtgtatatc 122  Q
    ||||||||||||||||||||||    
T  7621 aacaaatttatatgtgtatatc 7642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 2912 - 2961
Alignment:
Q  281 tatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2912 tatttgtgatcaaccgaattatgatttattttaggttcaacatttctttt 2961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 7801 - 7850
Alignment:
Q  281 tatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7801 tatttgtgatcaaccgaattatgatttattttaggttcaacatttctttt 7850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21825289 - 21825168
Alignment:
Q  1 tataacttaaccacttgacctatacttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaaggaaaa 100  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21825289 tataacttaaccacttcaccaatatttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaagaaaaa 21825190  T
Q  101 aacaaatttatatgtgtatatc 122  Q
    ||||||||||||||||||||||    
T  21825189 aacaaatttatatgtgtatatc 21825168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 21825009 - 21824960
Alignment:
Q  281 tatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21825009 tatttgtgatcaaccgaattatgatttattttaggttcaacatttctttt 21824960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 21779294 - 21779344
Alignment:
Q  280 ttatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||    
T  21779294 ttatttatgatcaaccgaactatgatttattttaggtccaacatatctttt 21779344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 8029674 - 8029640
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  8029674 atttgtgatcaaacgaattatgatttattttaggt 8029640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 8029949 - 8029915
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  8029949 atttgtgatccaccgaattatgatttattttaggt 8029915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 21779001 - 21779050
Alignment:
Q  8 taaccacttgacctatacttctttgatgaaataaattggaatacaaaata 57  Q
    ||||||||||||| ||| ||||||||||| |||| ||||||| |||||||    
T  21779001 taaccacttgaccaataattctttgatgacataatttggaatgcaaaata 21779050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 8027136 - 8027168
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  8027136 atttgtgatcaaccaaattatgatttattttag 8027168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20914269 - 20914146
Alignment:
Q  1 tataacttaaccacttgacctatacttctttgatgaaataaattggaatacaaaatacttctt--tgcagcgttttataatccaagttttagtaaaggaa 98  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||    
T  20914269 tataacttaaccacttgaccaatacttctttgatgaaataaattggaatacaaaatacttctttatgcagcgttttataatccaagttttagtaaagaaa 20914170  T
Q  99 aaaacaaatttatatgtgtatatc 122  Q
    ||||||||| ||||||||||||||    
T  20914169 aaaacaaatctatatgtgtatatc 20914146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 20921911 - 20921792
Alignment:
Q  1 tataacttaaccacttgacctatacttctttgatgaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaaggaaaa 100  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  20921911 tataacttaaccacctgaccaatacttctttgataaaataaattggaatacaaaatacttctttgcagcgttttataatccaagttttagtaaggaaaaa 20921812  T
Q  101 aacaaatttatatgtgtata 120  Q
    ||||||||||||||||||||    
T  20921811 aacaaatttatatgtgtata 20921792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 20893559 - 20893609
Alignment:
Q  280 ttatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20893559 ttatttgtgatcaaccgaattatgatttattttaggtccaacatatctttt 20893609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 20913989 - 20913939
Alignment:
Q  280 ttatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20913989 ttatttgtaatcaaccgaattatgatttattttaggtccaacatttctttt 20913939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 20921627 - 20921584
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggtccaacattt 325  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  20921627 atttgtgatcaaccgaattatgatttattttaagtccaacattt 20921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 27264814 - 27264780
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  27264814 atttgtgatcaaacgaattatgatttattttaggt 27264780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 27265087 - 27265053
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  27265087 atttgtgatccaccgaattatgatttattttaggt 27265053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 28395923 - 28395889
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  28395923 atttgtgatccaccgaattatgatttattttaggt 28395889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 31173281 - 31173247
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  31173281 atttgtgatcaaacgaattatgatttattttaggt 31173247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 31173554 - 31173520
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  31173554 atttgtgatccaccgaattatgatttattttaggt 31173520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20893190 - 20893242
Alignment:
Q  5 acttaaccacttgacctatacttctttgatgaaataaattggaatacaaaata 57  Q
    |||||||||||||||| ||| ||||||||| | |||| ||||||| |||||||    
T  20893190 acttaaccacttgaccaataattctttgataacataatttggaatgcaaaata 20893242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 20893271 - 20893330
Alignment:
Q  62 tttgcagcgttttataatccaagttttagtaaaggaaaaaacaaatttatatgtgtatatc 122  Q
    |||||||| ||||| |||| ||||||||| |||| ||||| ||| ||||||||||||||||    
T  20893271 tttgcagccttttaaaatcaaagttttagcaaagaaaaaatcaa-tttatatgtgtatatc 20893330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 27262321 - 27262353
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  27262321 atttgtgatcaaccaaattatgatttattttag 27262353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 31170754 - 31170786
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  31170754 atttgtgatcaaccaaattatgatttattttag 31170786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 41873894 - 41873926
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  41873894 atttgtgatcaaccaaattatgatttattttag 41873926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 43433086 - 43433036
Alignment:
Q  280 ttatttgtgatcaaccgaattatgatttattttaggtccaacatttctttt 330  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43433086 ttatttgtgatcaaccgaattatgatttattttaggtccaatatttctttt 43433036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 25920890 - 25920924
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  25920890 atttgtgatcaaccgaattatgatttattttaggt 25920924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 54398069 - 54398103
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  54398069 atttgtgatcaaccgaattatgatttattttaggt 54398103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 22159152 - 22159186
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  22159152 atttgtgatccaccgaattatgatttattttaggt 22159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 22159425 - 22159459
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  22159425 atttgtgatcaaacgaattatgatttattttaggt 22159459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 23314706 - 23314740
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  23314706 atttgtgatccaccgaattatgatttattttaggt 23314740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 51754584 - 51754618
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  51754584 atttgtgatcaaacgaattatgatttattttaggt 51754618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 22161963 - 22161931
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  22161963 atttgtgatcaaccaaattatgatttattttag 22161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 23317512 - 23317480
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  23317512 atttgtgatcaaccaaattatgatttattttag 23317480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 43433324 - 43433265
Alignment:
Q  62 tttgcagcgttttataatccaagttttagtaaaggaaaaaacaaatttatatgtgtatatc 122  Q
    ||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||||||||||||||||    
T  43433324 tttgcagtgttttgtaatcaaagttgtagtaaagaaaaaatcaa-tttatatgtgtatatc 43433265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 50997607 - 50997575
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  50997607 atttgtgatcaaccaaattatgatttattttag 50997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 5097778 - 5097744
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  5097778 atttgtgatcaaccgaattatgatttattttaggt 5097744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 24058735 - 24058701
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  24058735 atttgtgatcaaccgaattatgatttattttaggt 24058701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 24056982 - 24056946
Alignment:
Q  280 ttatttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24056982 ttatttgtgatcaaccaaattatgatttattttaggt 24056946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 5097501 - 5097467
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  5097501 atttgtgatcaaacgaattatgatttattttaggt 5097467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 39754584 - 39754550
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  39754584 atttgtgatcaaacgaattatgatttattttaggt 39754550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 5094972 - 5095004
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  5094972 atttgtgatcaaccaaattatgatttattttag 5095004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 13845671 - 13845705
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  13845671 atttgtgatcaaccgaattatgatttattttaggt 13845705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 13845946 - 13845980
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  13845946 atttgtgatcaaacgaattatgatttattttaggt 13845980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 37975460 - 37975494
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  37975460 atttgtgatcaaccgaattatgatttattttaggt 37975494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 3805778 - 3805812
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    ||||||||||||||||||||| |||||||||||||    
T  3805778 atttgtgatcaaccgaattataatttattttaggt 3805812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 33706938 - 33706904
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    ||||||||||||||||||||| |||||||||||||    
T  33706938 atttgtgatcaaccgaattataatttattttaggt 33706904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 37975734 - 37975768
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  37975734 atttgtgatcaaacgaattatgatttattttaggt 37975768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 44178001 - 44177967
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  44178001 atttgtgatcaaacgaattatgatttattttaggt 44177967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 44178274 - 44178240
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  44178274 atttgtgatccaccgaattatgatttattttaggt 44178240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 44184687 - 44184653
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  44184687 atttgtgatcaaacgaattatgatttattttaggt 44184653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 44184963 - 44184929
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  44184963 atttgtgatccaccgaattatgatttattttaggt 44184929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 44175472 - 44175504
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  44175472 atttgtgatcaaccaaattatgatttattttag 44175504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 44182173 - 44182205
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  44182173 atttgtgatcaaccaaattatgatttattttag 44182205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 36213680 - 36213714
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||||||||||||||||||||||||||    
T  36213680 atttgtgatcaaccgaattatgatttattttaggt 36213714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 2382218 - 2382252
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  2382218 atttgtgatccaccgaattatgatttattttaggt 2382252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 2382491 - 2382525
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  2382491 atttgtgatcaaacgaattatgatttattttaggt 2382525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 40325340 - 40325306
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  40325340 atttgtgatcaaacgaattatgatttattttaggt 40325306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 36215383 - 36215351
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  36215383 atttgtgatcaaccaaattatgatttattttag 36215351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 40322838 - 40322870
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  40322838 atttgtgatcaaccaaattatgatttattttag 40322870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 27276150 - 27276119
Alignment:
Q  282 atttgtgatcaaccgaattatgatttatttta 313  Q
    ||||||||||||||||||||||||||||||||    
T  27276150 atttgtgatcaaccgaattatgatttatttta 27276119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 414047 - 414081
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  414047 atttgtgatccaccgaattatgatttattttaggt 414081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 414272 - 414306
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  414272 atttgtgatcaaacgaattatgatttattttaggt 414306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 1656712 - 1656746
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  1656712 atttgtgatccaccgaattatgatttattttaggt 1656746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 1656985 - 1657019
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  1656985 atttgtgatcaaacgaattatgatttattttaggt 1657019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 6334653 - 6334687
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  6334653 atttgtgatccaccgaattatgatttattttaggt 6334687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 6334926 - 6334960
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  6334926 atttgtgatcaaacgaattatgatttattttaggt 6334960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 14032750 - 14032716
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  14032750 atttgtgatcaaacgaattatgatttattttaggt 14032716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 14033024 - 14032990
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  14033024 atttgtgatccaccgaattatgatttattttaggt 14032990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 36798263 - 36798297
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  36798263 atttgtgatccaccgaattatgatttattttaggt 36798297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 37403950 - 37403916
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  37403950 atttgtgatcaaacgaattatgatttattttaggt 37403916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 416783 - 416751
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  416783 atttgtgatcaaccaaattatgatttattttag 416751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 6337463 - 6337431
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  6337463 atttgtgatcaaccaaattatgatttattttag 6337431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 36798538 - 36798570
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||| ||||||||||||||||||||    
T  36798538 atttgtgatcaaacgaattatgatttattttag 36798570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 36803476 - 36803444
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  36803476 atttgtgatcaaccaaattatgatttattttag 36803444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 80629 - 80663
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  80629 atttgtgatccaccgaattatgatttattttaggt 80663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 80902 - 80936
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttaggt 316  Q
    |||||||||||| ||||||||||||||||||||||    
T  80902 atttgtgatcaaacgaattatgatttattttaggt 80936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 83431 - 83399
Alignment:
Q  282 atttgtgatcaaccgaattatgatttattttag 314  Q
    |||||||||||||| ||||||||||||||||||    
T  83431 atttgtgatcaaccaaattatgatttattttag 83399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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