View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_4 (Length: 749)
Name: NF16123_low_4
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 397 - 749
Target Start/End: Complemental strand, 47469719 - 47469367
Alignment:
| Q |
397 |
gcataacaaaaatgatgtaacataaacattttaacatttctcaggcactaaaggacataccacgagatcaaattcagattgctacaaagtttgggattgt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47469719 |
gcataacaaaaatgatgtaacataaacattttaacaattctcaggcacttaaggacataccacgagatcaaattcagattgctacaaagtttgggattgt |
47469620 |
T |
|
| Q |
497 |
caaaatggaatctggtaacgttgtagtaaatggtagtcctgaatatgttcgatcatgttgtgagggtagtcttcaacgtcttggggaggattacattgat |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47469619 |
caaaatggaatctggtaacgttgtagtaaatggtagtcctgaatatgttcgatcatgttgtgagggtagtcttcaacgtcttggggtggattacattgat |
47469520 |
T |
|
| Q |
597 |
ctcttttatcagcaccgtattgacaccactgttcccattgaggacactgtaagtaatagaatctattcttaaaatttgttaggaagtggtaggtaggtac |
696 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47469519 |
ctctattatcagcaccgtattgacaccactgttcccattgaggacactgtaagtaatagaatctattcttaaaatttgttaggaagtggtaggtaggtac |
47469420 |
T |
|
| Q |
697 |
tagtgtttttgatttggtgttttgaatgaatcacagatgggagagcttaagaa |
749 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47469419 |
tcgtgtttttgatttggtgttttgaatgaatcacagatgggagagcttaagaa |
47469367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 47470108 - 47469744
Alignment:
| Q |
7 |
ggagcagagaaacagaaagtgagaaacacnnnnnnnnnnnnnntgggagatactattcatattcctcgagtgaagcttggaagccaaggcctagaagtaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47470108 |
ggagcagagaaacagaaagtgagaaacacaaaaaaaataaaaatgggagatactattcatattcctcgagtgaagcttggaagccaaggcctagaagtaa |
47470009 |
T |
|
| Q |
107 |
gtaacttttgtccttccttgaattttcacacttccttgttcctgagaatcattgataatatttattgttgctttcaggtttctaagcttggatatggatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47470008 |
gtaacttttgtccttccttgaattttcacacttccttgttcctgagaatcattgataatatttattgttgctttcaggtttctaagcttggatatggatg |
47469909 |
T |
|
| Q |
207 |
tatgggcctcactggagtatacaacgctgctgttccagaagatgttgccatatctttgatcaaacatgctttctccaaaggaatcactttctttgacact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47469908 |
tatgggcctcactggagtatacaacgctgctgttccagaagatgttgccatatctttgatcaaacatgctttctccaaaggaatcactttctttgacact |
47469809 |
T |
|
| Q |
307 |
gctgatttttatgctgcacataccaatgaagtttttgtcggaaaggtactactttcattcacata |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47469808 |
gctgatttttatgctgcacataccaatgaagtttttgtcggaaaggtactactttcattcacata |
47469744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University