View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_42 (Length: 317)
Name: NF16123_low_42
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 42945215 - 42945502
Alignment:
| Q |
20 |
cttgcagccacagcaacattcacagaacagatgcagctccacaactagttggatattcaatcaaagtctgtctacaagtaggacaggaggagtgtgaaag |
119 |
Q |
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| T |
42945215 |
cttgcagccacagcaacattcacagaacagatgcagctccacaactagttggatattcaatcaaagtctgtctacaagtaggacaggaggagtgtgaaag |
42945314 |
T |
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| Q |
120 |
caaccaagtatctatgcattttacatggaatccatggttacattttggtagaattctaactttctctccatccataaactccccaagacaaattggacat |
219 |
Q |
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| T |
42945315 |
caaccaagtatctatgcattttacatggaatccatggttacattttggcagaattctaactttctctccatccataaactccccaagacaaattggacat |
42945414 |
T |
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| Q |
220 |
tctgtggctgcaaaactagtactactacctccagaaccataaacagctacagggatcttacgcaatgcacttttctttaaaccctttg |
307 |
Q |
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| T |
42945415 |
tctgtggctgcaaaactagtactactacctccagaaccataaacagctacagggatcttacgcaatgcacttttctttaaaccctttg |
42945502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 41763168 - 41763260
Alignment:
| Q |
176 |
taactttctctccatccataaactcccc--aagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagc |
266 |
Q |
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| T |
41763168 |
taactttctccccatccataaactccccctatgacaaattcgacaatttgtggccgtaaaactagtaccattacctccaaaaccataaacagc |
41763260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 34171868 - 34171962
Alignment:
| Q |
174 |
tctaactttctctccatccataaactcccc--aagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagc |
266 |
Q |
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| T |
34171868 |
tctaactttctccccatctataaactccccctatgacaaattcgacaatttgtggccgtaaaactagtaccattacctccaaaaccataaacagc |
34171962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 3958717 - 3958806
Alignment:
| Q |
174 |
tctaactttctctccatccataaact--ccccaagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataa |
261 |
Q |
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| T |
3958717 |
tctaactttctccccatccataaactgtcgctatgacaaattcgacaatttgtggctgtaaaactagtaccattacctccaaaaccataa |
3958806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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