View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_45 (Length: 301)
Name: NF16123_low_45
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 54629158 - 54629438
Alignment:
| Q |
21 |
tatgcattacaaagtgctctaaacaaggaaggatttgaatcgttattactcacttgagctcgccagctaatcaaaatgatatcatggcagaaagaaggac |
120 |
Q |
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| T |
54629158 |
tatgcattacaaagtgctctaaacaaggaaggatttgaatcgttattactcacttgagctcgccagctaatcaaaatgatatcatggcagaaagaaggac |
54629257 |
T |
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| Q |
121 |
ctatatcaggtagtagtggcagaagatcgacaaagtctaattgctttagcacactttgattcattactggacttatgaatttgaaagtcataacagagat |
220 |
Q |
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| T |
54629258 |
ccatatcaggtagtagtggcagaagatcgacaaagtctaattgctttagcacacttcgattcattactggacttatgaatttgaaagtcataacagagat |
54629357 |
T |
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| Q |
221 |
ggaaataaagatttgtattaacatttttgggttcaattatttgcagcggttgatgcgttcaaccatagagagggataattc |
301 |
Q |
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| T |
54629358 |
ggaaataaagatttggattaacatttttgggttcaattagttgcagcggttgatgcattcaatcatagagagggataattc |
54629438 |
T |
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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 45358434 - 45358623
Alignment:
| Q |
24 |
gcattacaaagtgctctaaacaaggaaggatttgaatcgttattactcacttgagctcgccagctaatcaaaatgatatcatggcagaaagaaggaccta |
123 |
Q |
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|||||||||||||| ||||||||||| |||||| || ||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| | |
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| T |
45358434 |
gcattacaaagtgcactaaacaaggatggatttaaactattattactcacttgagctctccagctattcaaaattatatcatgacagaaagaaggaccca |
45358533 |
T |
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| Q |
124 |
tatcaggtagtagtggcagaagatcgacaaagtctaattgctttagcacactttgattcattactggacttatgaatttgaaagtcataa |
213 |
Q |
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| T |
45358534 |
tatcaggtagtagtggcagaagatcgtcagagtctaattgctttagcacaccttgattcattacaggacttatgaatttgaaagtcataa |
45358623 |
T |
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