View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_5 (Length: 654)
Name: NF16123_low_5
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 11 - 635
Target Start/End: Original strand, 46929769 - 46930394
Alignment:
| Q |
11 |
cagagatctattcagaaatccaatgcattttcagggcccaagactcttgcagaaataaaagaagagaagaaaaagtccggtgaaagttcacattgtgaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929769 |
cagagatctattcagaaatccaatgcattttcagggcccaagactcttgcagaaataaaagaagagaagaaaaagtccggtgaaagttcacattgtgaaa |
46929868 |
T |
|
| Q |
111 |
gctcgtcagctggtttccaggatcccaaacctctgcatgaaattctcaaagacaggaccatggattgagtgagagatggcaatacctgcaacaattgaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929869 |
gctcgtcagctggtttccaggatcccaaacctctgcatgaaattctcaaagacaggaccatggattgagtgagagatggcaatacctgcaacaattgaat |
46929968 |
T |
|
| Q |
211 |
catgagattaaaatgactgatgattcaaaagactaatattcttgctgaagataatgagaaaaaattggcttcaggcgttttctttgtgttttttaggttg |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929969 |
catgagattaaaatgactgatgattcaaaagactaatattctttctgaagataatgagaaaaaattggcttcaggcgttttctttgtgttttttaggttg |
46930068 |
T |
|
| Q |
311 |
aaaattgaggtgctttctagcatcctttagtgtgctggatgacccgatcattggtatggttagatggtgaatatgtttttgttcgagcgaggttaagaag |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930069 |
aaaattgaggtgctttctagcatcctttagtgtgctggatgacccgatcattggtatggttagatggtgaatatgtttttgttcgagcgaggttaagaag |
46930168 |
T |
|
| Q |
411 |
aactcttagataagtgtttgagtgaaagaggtatcttctgtagttagttgaatatgttgatttggacaacagtactt-aatctagagagttgatcactga |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |
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| T |
46930169 |
aactcttagataagtgtttgagtgaaagaggtatcttctgtagttagttgaatatgttgatttggacaacggcacttaaatctagagagttgatcactga |
46930268 |
T |
|
| Q |
510 |
tttgcatgatatcttgtgtgtgtttgatttttggcctacttgttttttgtctataaagctgcttatgactcactactctttgtatggtaaatcggtcacc |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930269 |
tttgcatgatatcttgtgtgtgtttgatttttggcctacttgttttttgtctataaagctgcttatgactcactactctttgtatggtaaatcggtcacc |
46930368 |
T |
|
| Q |
610 |
ttcctggcttttatacaattgttgct |
635 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
46930369 |
ttcctggcttttatacaattgttgct |
46930394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 635
Target Start/End: Original strand, 47166974 - 47167612
Alignment:
| Q |
11 |
cagagatctattcagaaatccaatgcattttcagggcccaagactcttgcagaaataaaagaagagaagaaaaagtccggtgaaagttcacattgtgaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47166974 |
cagagatctattcagaaatccaatgcattttcagggcccaagactcttgcagaaataaaagaagagaagaaaaagtccggtgaaagttcacattgtgaaa |
47167073 |
T |
|
| Q |
111 |
gctcgtcagctggtttccaggatcccaaacctctgcatgaaattctcaaagacaggaccatggattgagtgagagatggcaatacctgcaacaattgaat |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167074 |
gctcgtcagctggtttccaggatcccaaacctctgcatgaaattctcaaagacaggaccatggattgagtgagagatggcaatacctgcaacaattgaat |
47167173 |
T |
|
| Q |
211 |
catgagattaaaatgactgatgattcaaaagactaatattcttgctgaagataatgagaa--aaaattggcttcaggcgttttcttt--gtgttttttag |
306 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||| | |||||| | |
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|
| T |
47167174 |
catgagattaaaatgactgatgattcagaagactaatatttttgctgaagataatgagaattttttttggcttcagccgttttcttttcttttttttttg |
47167273 |
T |
|
| Q |
307 |
gttgaaaattgaggtgctttctagcatcctttagtgtg------ctggatgacccgatcattggtatggttagatggtgaatatgtttttgttcgagcga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47167274 |
gttgaaaattgaggtgctttctagcatcctttagtgtgctggacctggatgaccctatcattggtatggttagatggtgaatatgttcttgttcgagcga |
47167373 |
T |
|
| Q |
401 |
ggttaagaagaactcttagata---agtgtttgagtgaaagaggtatcttctgtagttagttgaatatgttgatttggacaacagtactt-aatctagag |
496 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
47167374 |
ggttaagaagaactcttagataagcagtgtttgagtgaaagaggtatcttctgtagttagttgaatatgttgatttggacaacgacacttaaatctagag |
47167473 |
T |
|
| Q |
497 |
agttgatcactgatttgcatgatatcttgtgtgtgtttgatttttggcctacttgttttttgtctataaagctgcttatgactcactactctttgtatgg |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167474 |
agttgatcactgatttgcatgatatcttgtgtgtgtttgatttttgccctacttgttttttgtctataaagctgcttatgactcactactctttgtatgg |
47167573 |
T |
|
| Q |
597 |
taaatcggtcaccttcctggcttttatacaattgttgct |
635 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
47167574 |
taaatcggtcaccttcctggcttttatacaactgttgct |
47167612 |
T |
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