View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_52 (Length: 280)
Name: NF16123_low_52
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 41697386 - 41697590
Alignment:
| Q |
68 |
ctatgtaagggcactattatagagttcaccatgtataaaccataagtattagtttgcaatataacaaaaattaaatcaatatattggttctttataatta |
167 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41697386 |
ctatgtaagagcactattatagagctcaccatgtataaaccataagtattagttagcaatataacaaaaattaaatcaatatattggttctttataatta |
41697485 |
T |
|
| Q |
168 |
gaagaagagaatggagattcaaaaataaactcagaaacaactgatcttacgtttttctttttgagaatagcgtgaaaaaggtaagggtcctcctttgatg |
267 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
41697486 |
gaagaagggaatggagattcaaaaataaactcagaaacaactgatcttatgtttttctttttgaaaatagcgtgaaaaaggtaagggtcctcctttaatt |
41697585 |
T |
|
| Q |
268 |
atgtc |
272 |
Q |
| |
|
||||| |
|
|
| T |
41697586 |
atgtc |
41697590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 41693572 - 41693644
Alignment:
| Q |
70 |
atgtaagggcactattatagagttcaccatgtataaaccataagtattagtttgcaatataacaaaaattaaa |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
41693572 |
atgtaagggcactattatagagctcaccatgtataaaccataagtgttagttagcaatataacataaattaaa |
41693644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 41697305 - 41697356
Alignment:
| Q |
18 |
gtattatggtaaccaccagaaaagcaaaaaagggcaaatctcatcacgcact |
69 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41697305 |
gtattatggtaaccacaagaaaagcaaaaaagggcaaatctcatcacgcact |
41697356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 41695016 - 41695048
Alignment:
| Q |
135 |
aaattaaatcaatatattggttctttataatta |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41695016 |
aaattaaatcaatatattggttctttataatta |
41695048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University