View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_53 (Length: 277)
Name: NF16123_low_53
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 38248234 - 38248024
Alignment:
| Q |
15 |
gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtctaatcaatcatgattctgcccct |
114 |
Q |
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| T |
38248234 |
gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtataatcaatcatgattctgcccct |
38248135 |
T |
|
| Q |
115 |
taagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38248134 |
taagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatca |
38248035 |
T |
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| Q |
215 |
tatataatcac |
225 |
Q |
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||||||||||| |
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| T |
38248034 |
tatataatcac |
38248024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 38253199 - 38253055
Alignment:
| Q |
82 |
tggaagggtctaatcaatcatgattctgccccttaagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgta-gtg |
180 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||| | ||| |
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| T |
38253199 |
tggaagggtctaatcaataatgattctgcctcttaagagggattccatatttacactcaatatagcaccgacacttgagattaaagatgtgtaacacgtg |
38253100 |
T |
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| Q |
181 |
tcggacaccgagacaatattgacattttttatcatatataatcac |
225 |
Q |
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| T |
38253099 |
tcggacaccgagacaatattggcattttttatcatatataatcac |
38253055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 38253387 - 38253323
Alignment:
| Q |
15 |
gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaa |
79 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38253387 |
gcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaa |
38253323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 38243018 - 38242976
Alignment:
| Q |
31 |
ggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
73 |
Q |
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| T |
38243018 |
ggaggaaaatgggtgtgttcatgtgaagaggacaagtctccca |
38242976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 38214120 - 38214072
Alignment:
| Q |
36 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
84 |
Q |
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|
||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
38214120 |
gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactgg |
38214072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 38226499 - 38226451
Alignment:
| Q |
36 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
84 |
Q |
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|
||||||| |||||| ||||||| ||||||||||||||||||||| |||| |
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|
| T |
38226499 |
gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg |
38226451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 38238059 - 38238001
Alignment:
| Q |
15 |
gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
73 |
Q |
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|||||||||| || ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
38238059 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctccca |
38238001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 17454616 - 17454547
Alignment:
| Q |
15 |
gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
84 |
Q |
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|
|||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
17454616 |
gcagcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactgg |
17454547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 17433522 - 17433468
Alignment:
| Q |
30 |
aggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
84 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
17433522 |
aggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg |
17433468 |
T |
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