View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_55 (Length: 270)
Name: NF16123_low_55
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 14771884 - 14772122
Alignment:
| Q |
22 |
atgttattgtctgtttctttgttattcttccttgacgcattcttccttgcagtcgcagaaccatcccaatcgtcacggcaactccaactgcaatacaggt |
121 |
Q |
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| T |
14771884 |
atgttattgtctgtttctttgttattcttccttgacgcattcttccttgcagtcgcagaaccatcccaatcgtcatggcaactccaactgcaatacaggt |
14771983 |
T |
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| Q |
122 |
gtataatggattcagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatat |
221 |
Q |
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| T |
14771984 |
gtataatggattaagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatat |
14772083 |
T |
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| Q |
222 |
acctgaagcatacttaagagatcgacctatgagtctgtg |
260 |
Q |
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| T |
14772084 |
acctgaagcatacataagagatcgacctatgagtctgtg |
14772122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 15014113 - 15014240
Alignment:
| Q |
135 |
agttaccataatagatttaacaacttta-atatacaaagttaaaaggaacttaacgaacaat-taacaagttaacctggaaaatgatatacctgaagcat |
232 |
Q |
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| T |
15014113 |
agttagcatgatagattgaaaaacttaatatatacaaagtcaaaagcaatttaatgaagaaactaacaagtaaacctaaaaaataatatacctgaaacaa |
15014212 |
T |
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| Q |
233 |
acttaagagatcgacctatgagtctgtg |
260 |
Q |
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| T |
15014213 |
acataagagatcgatctatgagtctgtg |
15014240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 17878747 - 17878844
Alignment:
| Q |
147 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatc |
244 |
Q |
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| T |
17878747 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatc |
17878844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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