View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_57 (Length: 269)
Name: NF16123_low_57
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 42306901 - 42306681
Alignment:
| Q |
38 |
gagttcaagagcatgttagaggggagttcatcgagtacgttttggtgtcgtagttgacaaaccttttaggctatcgctgttaatgcatcgtgactttgag |
137 |
Q |
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| T |
42306901 |
gagttcaagagcatgttagaggggagttcatcgagtacgttttggcatcgtagttgacaaaccttttaggctatcgctgttaatgcattgtgactttgag |
42306802 |
T |
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| Q |
138 |
ggatgattagtaatctagtccttttaagtttattatatataatctttgtaacctttattatatggtattctattaaaattctaatctcctttgtgattct |
237 |
Q |
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| T |
42306801 |
ggatgattagtaatctagtccttttaagtttattatatataatctttgtaacctttattatatggtattctgttaaaattctaatctcctttgttattct |
42306702 |
T |
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| Q |
238 |
ttcttcttgattctctatatt |
258 |
Q |
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| T |
42306701 |
ctcttcttgattctctatatt |
42306681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 42306943 - 42306895
Alignment:
| Q |
19 |
atgactacgtttgaaagcagagttcaagagcatgttagaggggagttca |
67 |
Q |
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| T |
42306943 |
atgaccacgtttgaaagcggagttcaagagcatgttagaggggagttca |
42306895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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