View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_58 (Length: 266)

Name: NF16123_low_58
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_58
NF16123_low_58
[»] chr5 (5 HSPs)
chr5 (128-247)||(5845604-5845723)
chr5 (1-93)||(5845758-5845841)
chr5 (22-64)||(26660446-26660487)
chr5 (22-64)||(26932038-26932079)
chr5 (23-67)||(11148507-11148550)
[»] chr1 (4 HSPs)
chr1 (24-68)||(11097915-11097958)
chr1 (25-68)||(7078531-7078573)
chr1 (27-67)||(3672341-3672380)
chr1 (26-66)||(7422972-7423011)
[»] chr2 (2 HSPs)
chr2 (25-67)||(2841832-2841873)
chr2 (23-68)||(14954630-14954674)
[»] chr8 (1 HSPs)
chr8 (23-64)||(11223894-11223934)
[»] chr7 (1 HSPs)
chr7 (24-65)||(11352996-11353036)
[»] chr6 (1 HSPs)
chr6 (18-67)||(33421751-33421799)
[»] chr3 (1 HSPs)
chr3 (27-68)||(2482705-2482745)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 5845723 - 5845604
Alignment:
Q  128 atgttcctctcaattgtggttttcaattagaggatttcagttcaccacaacaaaaagaggatttcattcctagaaaaagaatttgatgaannnnnnnaga 227  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||    
T  5845723 atgttcctctcaattgtggtttccaattagaggatttcagttcaccataacaaaaagaggatttcattcctagaaaaagaatttgatgaatttttttaga 5845624  T
Q  228 tgatttcaatcaggacgtgg 247  Q
    ||||||||||||||||||||    
T  5845623 tgatttcaatcaggacgtgg 5845604  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5845841 - 5845758
Alignment:
Q  1 tttataaaagtacattttttcgataagagaaatgatatttgtatcatcaattttgtgacaacttttgaccgtcacaattatgatcatacaata 93  Q
    |||||||||||| ||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5845841 tttataaaagtatattttttcgataagagagat---------atcatcaattttgtgacaacttttgaccgtcacaattatgatcatacaata 5845758  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 26660487 - 26660446
Alignment:
Q  22 gataagagaaatgatatttgtatcatcaattttgtgacaactt 64  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  26660487 gataagagaaatgatatttgta-catccattttgtgacaactt 26660446  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 26932079 - 26932038
Alignment:
Q  22 gataagagaaatgatatttgtatcatcaattttgtgacaactt 64  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  26932079 gataagagaaatgatatttgta-catccattttgtgacaactt 26932038  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 11148507 - 11148550
Alignment:
Q  23 ataagagaaatgatatttgtatcatcaattttgtgacaacttttg 67  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||    
T  11148507 ataagagaaatgatatttgtacaatcaatttt-tgacaacttttg 11148550  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 11097958 - 11097915
Alignment:
Q  24 taagagaaatgatatttgtatcatcaattttgtgacaacttttga 68  Q
    |||||||||||||||||||| |||| |||||||||||||||||||    
T  11097958 taagagaaatgatatttgta-catccattttgtgacaacttttga 11097915  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 7078573 - 7078531
Alignment:
Q  25 aagagaaatgatatttgtatcatcaattttgtgacaacttttga 68  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  7078573 aagagaaatgatatttgta-catctattttgtgacaacttttga 7078531  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 3672341 - 3672380
Alignment:
Q  27 gagaaatgatatttgtatcatcaattttgtgacaacttttg 67  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  3672341 gagaaatgatatttgtaccatcaatttt-tgacaacttttg 3672380  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 7422972 - 7423011
Alignment:
Q  26 agagaaatgatatttgtatcatcaattttgtgacaactttt 66  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  7422972 agagaaatgatatttgaat-atcaattttgtgacaactttt 7423011  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 2841832 - 2841873
Alignment:
Q  25 aagagaaatgatatttgtatcatcaattttgtgacaacttttg 67  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  2841832 aagagaaatgatatttg-atcatccattttgtgacaacttttg 2841873  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 14954674 - 14954630
Alignment:
Q  23 ataagagaaatgatatttgtatcatcaattttgtgacaacttttga 68  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||    
T  14954674 ataagagaaatgatatttgta-catacattttgtgacaacttttga 14954630  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 11223934 - 11223894
Alignment:
Q  23 ataagagaaatgatatttgtatcatcaattttgtgacaactt 64  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  11223934 ataagagaaatgatatttgta-catccattttgtgacaactt 11223894  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 11353036 - 11352996
Alignment:
Q  24 taagagaaatgatatttgtatcatcaattttgtgacaacttt 65  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  11353036 taagagaaatgatatttgaa-catcaattttgtgacaacttt 11352996  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 33421751 - 33421799
Alignment:
Q  18 tttcgataagagaaatgatatttgtatcatcaattttgtgacaacttttg 67  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||||||||    
T  33421751 tttcaataagagaaatgatatttg-aacatccattttgtgacaacttttg 33421799  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 2482745 - 2482705
Alignment:
Q  27 gagaaatgatatttgtatcatcaattttgtgacaacttttga 68  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  2482745 gagaaatgatatttgta-catccattttgtgacaacttttga 2482705  T

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