View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_6 (Length: 645)
Name: NF16123_low_6
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 250 - 624
Target Start/End: Complemental strand, 28698309 - 28697934
Alignment:
| Q |
250 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
349 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||| |
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|
| T |
28698309 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctttaaagatttggacaagacaactatttccaaagtcagaattggaaa |
28698210 |
T |
|
| Q |
350 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
449 |
Q |
| |
|
|| || |||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28698209 |
tgacgtacttattgaagtaaaaggcaagggaacagttgcaattgaaagcctttcaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
28698110 |
T |
|
| Q |
450 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgagg-nnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
548 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
28698109 |
cataaccttttgagtgttactcaactgctagagaatggttataaggagttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatagaaatgg |
28698010 |
T |
|
| Q |
549 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttgtacacaagga |
624 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||| |
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|
| T |
28698009 |
tcaatgttcaaatgaaaggcaagagcttttccttggatttgataaatgaggaacaacatgttgttgtacccaagga |
28697934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 28698635 - 28698405
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28698635 |
agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagca |
28698536 |
T |
|
| Q |
114 |
atacaagtctcttttcaccctgtccatactgc-nnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtc |
212 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| |
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|
| T |
28698535 |
atacaagtctcttttcaccttgtccattctgcaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggtc |
28698436 |
T |
|
| Q |
213 |
agttaggacatgtggaaagaatatgcaaggc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
28698435 |
agttaggacatgtggaaagaatatgcaaggc |
28698405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 250 - 627
Target Start/End: Original strand, 627280 - 627658
Alignment:
| Q |
250 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
349 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||||||||||||||| ||||||||||||||| |
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|
| T |
627280 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctataaagatttggacgagacaactatttccagagtcagaattggaaa |
627379 |
T |
|
| Q |
350 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
449 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
627380 |
tggcgtacttattgaagtaaaaggcaagggaacagttgcaattgaatgcctttcaggtttgaaactaatttctgatgtcttatatgtttctaaaattaat |
627479 |
T |
|
| Q |
450 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgagg-nnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
627480 |
caaaaccttttgagtgttactcaactgctagagaatggttataaggtgttgtttgaggataaaaaatgtgtgattacagatgcaaacaatatagaaatgg |
627579 |
T |
|
| Q |
549 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttgtacacaaggaagg |
627 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
627580 |
tcaatgttcaaatgaaatgcaagagcttttccttggatttgatgaatgaggaacaacatgttgctgtacataaggaagg |
627658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 626952 - 627184
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
626952 |
agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagca |
627051 |
T |
|
| Q |
114 |
atacaagtctcttttcaccctgtccatactgc---nnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtgg |
210 |
Q |
| |
|
||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |
|
|
| T |
627052 |
atataagtctcttttcaccctatccatactgcaaaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtgg |
627151 |
T |
|
| Q |
211 |
tcagttaggacatgtggaaagaatatgcaaggc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
627152 |
ccagttaggacatgtggaaagaatatgcaaggc |
627184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 29868428 - 29868483
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
69 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
29868428 |
agaagaatgataaggtctgaaggatcagtggaaggagcattacaagctaaattaaa |
29868483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 250 - 491
Target Start/End: Complemental strand, 33721097 - 33720856
Alignment:
| Q |
250 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
33721097 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccggacgagacaactatttccaaagtcagaattggaaa |
33720998 |
T |
|
| Q |
350 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
449 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33720997 |
tggcgcacttatcgaagtaaaaggcaagggaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
33720898 |
T |
|
| Q |
450 |
caaaaccttttgagtgttactcaactgctagagaatgcttat |
491 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33720897 |
caaaaccttttgagtgttactcaaccgctagagaatggttat |
33720856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 33721422 - 33721193
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721422 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca |
33721323 |
T |
|
| Q |
114 |
atacaagtctcttttcaccctgtccatactgcnnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
33721322 |
atacaagtctcttttcaccctgtccatactgcaaaaaaaataaccatccacaaaacagatattggtggagaccaaacgtaaaatgtcagaagtgttgtca |
33721223 |
T |
|
| Q |
214 |
gttaggacatgtggaaagaatatgcaaggc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33721222 |
gttaggacatgtggaaagaatatgcaaggc |
33721193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 515 - 627
Target Start/End: Complemental strand, 33716540 - 33716428
Alignment:
| Q |
515 |
tgtgtgattaaagatgcaagcaacatagaaatggtcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttg |
614 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33716540 |
tgtgtgattaaagatgcaaacaacatacaaatggtcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaacaacatgttgttg |
33716441 |
T |
|
| Q |
615 |
tacacaaggaagg |
627 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33716440 |
tacacaaggaagg |
33716428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 19965894 - 19965949
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
69 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19965894 |
agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
19965949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 21027102 - 21027047
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
69 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21027102 |
agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
21027047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 20785921 - 20785866
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
69 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20785921 |
agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
20785866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 29470140 - 29470195
Alignment:
| Q |
14 |
agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
69 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
29470140 |
agaagaacgataaggtctgaaggttcagtggaaggagcattgcaagctaaattaaa |
29470195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 31082293 - 31082343
Alignment:
| Q |
404 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
454 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
31082293 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
31082343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 9307516 - 9307566
Alignment:
| Q |
404 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
454 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
9307516 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
9307566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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