View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16123_low_67 (Length: 250)
Name: NF16123_low_67
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_67 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 4627656 - 4627419
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||| ||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627656 |
ttgttgatactagcaaaattacttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
4627557 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4627556 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctct |
4627457 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagccctttg |
240 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4627456 |
ttcccaatcaataagaaagaacttccttcagccctttg |
4627419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 4258798 - 4259035
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4258798 |
ttgttcaaactagctaagcttcttcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaa |
4258897 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| || | ||||||| | || ||| | ||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
4258898 |
atgccgttgatggtttcattgattttacctttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccct |
4258997 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagccctttg |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4258998 |
ttctcaatctataagaaagaacttccttcagccctttg |
4259035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 4594516 - 4594280
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
4594516 |
ttgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaa |
4594417 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||| ||||||||||||||| |||||||| | ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4594416 |
atgccttagatggtttccctggttttagctttgaaaccataccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctct |
4594317 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagcccttt |
239 |
Q |
| |
|
| ||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
4594316 |
tgctcaatctataagaaagaatttccttaaacccttt |
4594280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4623813 - 4623593
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
4623813 |
ttgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaa |
4623714 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
| ||||||||||||||| || |||| |||||||||||| |||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4623713 |
aggcctttgatggtttcacggactttaactttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctct |
4623614 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaa |
223 |
Q |
| |
|
|||| | |||||||| ||||| |
|
|
| T |
4623613 |
ttctgattcaataaggaagaa |
4623593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4517848 - 4517626
Alignment:
| Q |
1 |
cgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtga |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4517848 |
cgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcc |
4517749 |
T |
|
| Q |
101 |
aaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctct |
200 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||| || |||||||||||||| || ||||||| ||||| ||||||| ||||||||| |||| |
|
|
| T |
4517748 |
aaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacattatctct |
4517649 |
T |
|
| Q |
201 |
ctttctcaatcaataagaaagaa |
223 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
4517648 |
ctttccgattcaataagaaagaa |
4517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 4618807 - 4618580
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
4618807 |
ttgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaa |
4618708 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
| || |||||||||||| || |||| |||||||| ||| |||||||||||||||||| | ||||||||||| ||||||| |||||| |||| |||| |
|
|
| T |
4618707 |
aggcttttgatggtttcacggactttaactttgagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagatgtaccaactct |
4618608 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttcctt |
230 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |
|
|
| T |
4618607 |
ttgtcaatcagtaagaaagaacttcctt |
4618580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 4575961 - 4575761
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4575961 |
ttgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
4575862 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| ||| || ||| |||| ||||| | ||||||| ||| |||||| |
|
|
| T |
4575861 |
atgcctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctct |
4575762 |
T |
|
| Q |
203 |
t |
203 |
Q |
| |
|
| |
|
|
| T |
4575761 |
t |
4575761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 3173509 - 3173298
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||||||||||| || |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| || |
|
|
| T |
3173509 |
ttgttgaaactagcaaaactacttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaa |
3173410 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| || | ||||||||||| ||||||| ||||||| ||| | |||| |
|
|
| T |
3173409 |
atgcctttgatggtttcaatgattttaactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctct |
3173310 |
T |
|
| Q |
203 |
ttctcaatcaat |
214 |
Q |
| |
|
|| || |||||| |
|
|
| T |
3173309 |
ttgtcgatcaat |
3173298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 4488819 - 4489006
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||||||| ||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
4488819 |
ttgttgaaactaggaaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaa |
4488918 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaaga |
190 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| || |||||||||||||| ||| ||| |||||||||||||||| |||||| |
|
|
| T |
4488919 |
atgcctttgatggtttaactgattttagctttgagactattccagatggtttaactccaacagatggtgatggcgatgttagtcaaga |
4489006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 4558631 - 4558405
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||| |||||||||||||| |||||||| |||||||| ||||||||| || |
|
|
| T |
4558631 |
ttgttgaaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaa |
4558532 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| || || ||||||||||| ||| || |||||||||||||||| ||||||||| | |||| |
|
|
| T |
4558531 |
atgcctttgatggtttcactgattttagctttgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctct |
4558432 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttcct |
229 |
Q |
| |
|
|| | ||||||| |||||||||||||| |
|
|
| T |
4558431 |
ttgtaaatcaatcagaaagaacttcct |
4558405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 4502951 - 4503103
Alignment:
| Q |
39 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgaga |
138 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4502951 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
4503050 |
T |
|
| Q |
139 |
ccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagac |
191 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| ||||||| ||||||| |
|
|
| T |
4503051 |
ccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagac |
4503103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 4507417 - 4507237
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4507417 |
ttgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaa |
4507318 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgtta |
183 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||| | || |||||||| ||||||| |
|
|
| T |
4507317 |
atgcctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
4507237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 4581512 - 4581294
Alignment:
| Q |
11 |
actagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgccttt |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| || ||| |
|
|
| T |
4581512 |
actagcaaagcttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgttt |
4581413 |
T |
|
| Q |
111 |
gatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaat |
210 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||| || ||||||| ||| | ||||||| |||||||||| |||| | | ||| |
|
|
| T |
4581412 |
gatggtttcaccgattttacctttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaat |
4581313 |
T |
|
| Q |
211 |
caataagaaagaacttcct |
229 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
4581312 |
caatcagaaagaacttcct |
4581294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 4565535 - 4565308
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| || |
|
|
| T |
4565535 |
ttgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaa |
4565436 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||||| ||||||| | || |||| |||||| ||||||||||||||| ||||||| ||||||||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
4565435 |
atgccttagatggttcccgtggtttttgctttgaaaccataccagatggtctaacaccgatagaaggtgatggtgatgttagtcaagatgtaccttctct |
4565336 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttcctt |
230 |
Q |
| |
|
| ||||||| |||||||| || |||||| |
|
|
| T |
4565335 |
tgctcaatctataagaaaaaatttcctt |
4565308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 4482371 - 4482160
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||| ||| ||| || |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
4482371 |
ttgttgaaaataggaaaactacttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaa |
4482272 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||| | |||||||||| || || | ||||||| || |||||| |
|
|
| T |
4482271 |
aagcctttgatggtttcactgattttacctttgaaacgataccagatggtttaactccaattgaaggtgatgatgaagtaagtcaagacttattctctct |
4482172 |
T |
|
| Q |
203 |
ttctcaatcaat |
214 |
Q |
| |
|
| |||||||||| |
|
|
| T |
4482171 |
tactcaatcaat |
4482160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 4265679 - 4265916
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| || |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
4265679 |
ttgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaa |
4265778 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|| | ||||||||||| ||| |||| ||||||||||||||||||||| |||| ||| | ||||| |||| |||| ||||||||||||| | |||| |
|
|
| T |
4265779 |
attctcttgatggtttcagtgactttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctct |
4265878 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagccctttg |
240 |
Q |
| |
|
| |||||||| | | |||||||||||| ||||||| |
|
|
| T |
4265879 |
tgtgcaatcaatcatgacgaacttccttcaaccctttg |
4265916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 4562168 - 4561968
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa-cctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaa |
101 |
Q |
| |
|
||||||||| ||||||| || |||||||| | ||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4562168 |
ttgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaa |
4562070 |
T |
|
| Q |
102 |
aatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctc |
201 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| ||| || |||||||| ||| ||| ||||||| ||| ||||| |
|
|
| T |
4562069 |
aatgcctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctc |
4561970 |
T |
|
| Q |
202 |
tt |
203 |
Q |
| |
|
|| |
|
|
| T |
4561969 |
tt |
4561968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 4603615 - 4603380
Alignment:
| Q |
4 |
tgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaa |
103 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4603615 |
tgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaa |
4603516 |
T |
|
| Q |
104 |
tgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctt |
203 |
Q |
| |
|
|||||| || || ||| |||||||| |||||| || || |||||||| ||||||| | |||||||||| |||||| |||||| |||| ||| || |
|
|
| T |
4603515 |
tgccttagacggcttcactgattttagctttgaaacaatcccagatggactaacaccgatggaaggtgatgataatgttagtcaagatgtaccttctatt |
4603416 |
T |
|
| Q |
204 |
tctcaatcaataagaaagaacttccttcagcccttt |
239 |
Q |
| |
|
|||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
4603415 |
tctcaatctataagaaagaatttccttaaacccttt |
4603380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 4587138 - 4586912
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| | || |
|
|
| T |
4587138 |
ttgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaa |
4587039 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||| || |||||||||||||| ||| || |||||||| ||||||| ||||||||| | |||| |
|
|
| T |
4587038 |
atgcctttgatgatttaactgattttagctttgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctct |
4586939 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttcct |
229 |
Q |
| |
|
|| | ||||||| |||||||||||||| |
|
|
| T |
4586938 |
ttgtaaatcaatcagaaagaacttcct |
4586912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 4572472 - 4572282
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
4572472 |
ttgttgcaactagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaa |
4572373 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacat |
193 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| || |||||||||||| | ||| || || ||||||||||||| ||||||||| |
|
|
| T |
4572372 |
atgcctttgatggtttcaccaattttaactttgagagtattccagatggtttatctccaacggatggcgatggcgatgttagtcaagacat |
4572282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 4569573 - 4569360
Alignment:
| Q |
6 |
ttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatg |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
4569573 |
ttgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccgaa----atcacaaacatttgctcaaatcaagaggtccaaaag |
4569478 |
T |
|
| Q |
106 |
cctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttc |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||||||||| || ||||||| |||| ||| ||| |||||| || ||||||| |
|
|
| T |
4569477 |
cctttgatggtttcactgattttacctttgagactattccagatggtttaactccgacagaaggttatggtgatattagtcaagaaattgtctctcttga |
4569378 |
T |
|
| Q |
206 |
tcaatcaataagaaagaa |
223 |
Q |
| |
|
| | |||||||||||||| |
|
|
| T |
4569377 |
tgattcaataagaaagaa |
4569360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 4612346 - 4612489
Alignment:
| Q |
9 |
aaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcct |
108 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
4612346 |
aaactagcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
4612445 |
T |
|
| Q |
109 |
ttgatggtttcgatgattttacctttgagaccataccagatggt |
152 |
Q |
| |
|
||| ||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
4612446 |
ttgttggtttcactgattttacctttgaggctataccagatggt |
4612489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 4298172 - 4298357
Alignment:
| Q |
55 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
154 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||| ||| ||| || |||||||||||| | |||| ||||||||| || ||||||||| | |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct |
4298271 |
T |
|
| Q |
155 |
aacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
240 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4298272 |
gactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttg |
4298357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 4513611 - 4513755
Alignment:
| Q |
13 |
tagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttga |
112 |
Q |
| |
|
||||||| || |||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4513611 |
tagcaaaactacttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttga |
4513710 |
T |
|
| Q |
113 |
tggtttcgatgattttacctttgagaccataccagatggtttaac |
157 |
Q |
| |
|
||||||| |||||| ||||||||| || || ||||||||||| |
|
|
| T |
4513711 |
tggtttcaccgattttcgctttgagactattcctgatggtttaac |
4513755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4599663 - 4599443
Alignment:
| Q |
9 |
aaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcct |
108 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| |||||||||| || ||||| || |||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
4599663 |
aaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctc |
4599564 |
T |
|
| Q |
109 |
ttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctca |
208 |
Q |
| |
|
| |||||||| ||||||| |||| ||||| || |||||||||||||| ||| |||| |||||||| |||||||| || |||||| ||||| | | | |
|
|
| T |
4599563 |
gtaatggtttcactgatttttccttcgagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaa |
4599464 |
T |
|
| Q |
209 |
atcaataagaaagaacttcct |
229 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
4599463 |
atcaatcagaaataacttcct |
4599443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 4471420 - 4471269
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4471420 |
ttgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctg |
4471321 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
154 |
Q |
| |
|
|| | ||||||||||| ||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
4471320 |
attctcttgatggtttcactgactttaactttgagaccattccaaatggttt |
4471269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 4462713 - 4462562
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| | |
|
|
| T |
4462713 |
ttgttgaaactaggaaaactacttcaccttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtccta |
4462614 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
154 |
Q |
| |
|
|| | | ||||||||| ||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
4462613 |
attctctagatggtttcactgactttaactttgagaccattccaaatggttt |
4462562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 4255478 - 4255545
Alignment:
| Q |
50 |
ctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtt |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
4255478 |
ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 4483534 - 4483568
Alignment:
| Q |
64 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
4483568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 4496222 - 4496189
Alignment:
| Q |
65 |
atacaatcacaaacgtttgctcaaatcaagaggt |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
4496222 |
atacaatgacaaacgtttgctcaaatcaagaggt |
4496189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 1282939 - 1282712
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||| ||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
1282939 |
ttgttcaaactagcaaaactacttcaccttagaggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaa |
1282840 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
||||| | ||||||||| |||||||| |||||| ||||| ||||||||| ||||| |||||||||||||||| ||||||| |||| | |||| ||||| |
|
|
| T |
1282839 |
atgccctagatggtttcactgattttagctttgaaaccatcccagatggtctaacatcactagaaggtgatggtgatgttagtcaacatgtaccttctct |
1282740 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttcctt |
230 |
Q |
| |
|
|| |||||| ||||||||||| |||||| |
|
|
| T |
1282739 |
ttgtcaatctataagaaagaatttcctt |
1282712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 35776322 - 35776272
Alignment:
| Q |
33 |
aaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
83 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35776322 |
aaaggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35776272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 35842126 - 35842079
Alignment:
| Q |
36 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
83 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35842126 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35842079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 35854634 - 35854587
Alignment:
| Q |
36 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
83 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35854634 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35854587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 35869243 - 35869196
Alignment:
| Q |
36 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
83 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35869243 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35869196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 35759894 - 35759847
Alignment:
| Q |
36 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
83 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35759894 |
ggtttccacataacctttgtgaacactgaattcaaccacaaacgtttg |
35759847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 1264 - 1031
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1264 |
ttgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaa |
1165 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||| |
|
|
| T |
1164 |
ctgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctct |
1068 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagcccttt |
239 |
Q |
| |
|
|| |||||| ||||||||||| |||||| | |||||| |
|
|
| T |
1067 |
ttgtcaatctataagaaagaatttccttaaacccttt |
1031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 1676027 - 1675794
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1676027 |
ttgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaa |
1675928 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||| |
|
|
| T |
1675927 |
ctgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctct |
1675831 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagcccttt |
239 |
Q |
| |
|
|| |||||| ||||||||||| |||||| | |||||| |
|
|
| T |
1675830 |
ttgtcaatctataagaaagaatttccttaaacccttt |
1675794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 20862433 - 20862582
Alignment:
| Q |
4 |
tgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaa |
103 |
Q |
| |
|
|||| ||||||||||| || |||||||||| ||| ||| ||||||| |||||||| |||||||||||||||||||| ||||| || |||| ||| || |
|
|
| T |
20862433 |
tgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaat |
20862532 |
T |
|
| Q |
104 |
tgcctttgatggtttcgatgattttacctttgagaccataccagatggtt |
153 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||| | |||||||||| |
|
|
| T |
20862533 |
accctttgatggtttcactgactttcgctttgagaccgttccagatggtt |
20862582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 16685029 - 16685145
Alignment:
| Q |
123 |
gattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaaga |
222 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||| | ||| || |||||||||||||||| ||||||||||| | |||||| | ||||||| ||||||| |
|
|
| T |
16685029 |
gattttagctttgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaaga |
16685128 |
T |
|
| Q |
223 |
acttccttcagcccttt |
239 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
16685129 |
acttcctccaacccttt |
16685145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 2073 - 2305
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
2073 |
ttgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtccta |
2172 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcg---atgttactcaagacataccctc |
199 |
Q |
| |
|
|||| |||||||||||| ||||||| ||| ||||| || || ||||||||||| ||| | |||| ||||| | |||||| ||||||||||| ||| |
|
|
| T |
2173 |
atgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctc |
2272 |
T |
|
| Q |
200 |
tctttctcaatcaataagaaagaacttccttca |
232 |
Q |
| |
|
||||| | ||||||| ||||| ||||||||||| |
|
|
| T |
2273 |
tctttgtaaatcaatcagaaaaaacttccttca |
2305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 2324 - 2098
Alignment:
| Q |
9 |
aaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcct |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
2324 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctc |
2225 |
T |
|
| Q |
109 |
ttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcg---atgttactcaagacataccctctctttc |
205 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| || || ||||||||||| ||| | |||| ||||| | |||||| ||||||||||| |||||||| |
|
|
| T |
2224 |
ttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttg |
2125 |
T |
|
| Q |
206 |
tcaatcaataagaaagaacttccttca |
232 |
Q |
| |
|
| ||||||| ||||| ||||||||||| |
|
|
| T |
2124 |
taaatcaatcagaaaaaacttccttca |
2098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 24104601 - 24104364
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||| |||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||| | | |
|
|
| T |
24104601 |
ttgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatccta |
24104502 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|| | ||||||||||| |||| |||| |||||||||||||||||||||| |||| ||| | ||||| |||| |||||||||||||||||| | |||| |
|
|
| T |
24104501 |
attctcttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagacatataccctct |
24104402 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagccctttg |
240 |
Q |
| |
|
| |||||||| | | |||||||||||||||||||| |
|
|
| T |
24104401 |
tgtgcaatcaatcatgacgaacttccttcagccctttg |
24104364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 26903670 - 26903638
Alignment:
| Q |
48 |
acctttgtcaacactgaatacaatcacaaacgt |
80 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
26903670 |
acctttgttaacactgaatacaatcacaaacgt |
26903638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 3088251 - 3088014
Alignment:
| Q |
3 |
ttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaa |
102 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||| | |
|
|
| T |
3088251 |
ttgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttcta |
3088152 |
T |
|
| Q |
103 |
atgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctct |
202 |
Q |
| |
|
|| | ||||||||||| ||||||| ||||||||| || | ||||||| |||| ||| | |||||| |||| ||||||| ||||||| | | ||||| |
|
|
| T |
3088151 |
attctcttgatggtttcactgattttgtctttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctct |
3088052 |
T |
|
| Q |
203 |
ttctcaatcaataagaaagaacttccttcagccctttg |
240 |
Q |
| |
|
|| ||||||| | ||||||||||| |||| ||||||| |
|
|
| T |
3088051 |
ttgtcaatcagttggaaagaacttcattcaaccctttg |
3088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 3310 - 3379
Alignment:
| Q |
169 |
gtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctt |
238 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
3310 |
gtgatggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagccctt |
3379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 1921 - 1971
Alignment:
| Q |
33 |
aaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
83 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
1921 |
aaaggtttccatataacctttgtgaacactgaattcaaccacaaacgtttg |
1971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 1349579 - 1349627
Alignment:
| Q |
43 |
acataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatc |
91 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||| || |||||||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatc |
1349627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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