View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_68 (Length: 250)
Name: NF16123_low_68
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9162462 - 9162223
Alignment:
| Q |
1 |
aaaacatattccttgctgaaccagaatgaattggccaaaactagtcaacaggtctaatcatctaaaatttagaacttttggccgagatttcagtctctga |
100 |
Q |
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| T |
9162462 |
aaaacatattccttgctgaaccagaatgaattggccaaaactagtcaacaggtctaatcatctaaaatttagaacttttggccgagatttcagtctttga |
9162363 |
T |
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| Q |
101 |
tctaatataaacccattcgatagataaacagcaaactaaattgtcgtttaagataagggagaaaaaattgatttgctcaaaatcaaaaagtacaagtggc |
200 |
Q |
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| T |
9162362 |
tctaatataaacccattcgatagataaacagcaaactaaattgtcgtttaagataagggagaaaaaattgatttgctcaaaatcaaaaagtacaagtggc |
9162263 |
T |
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| Q |
201 |
agcattaagacaagtgaggaacatatacttctcccctttg |
240 |
Q |
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| T |
9162262 |
agcattaagacaagtgaggaacgtatacttctcccctttg |
9162223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 9149808 - 9149598
Alignment:
| Q |
4 |
acatattccttgctgaaccagaatgaattggccaaaactagtcaacaggtctaatcatctaaaatttagaacttttggccgagatttcagtctctgatct |
103 |
Q |
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| T |
9149808 |
acattttccttgttgaaccagaatgagttgatcaaaatcagtgaactgttctaatcgtctaaaatttagaacttttggttaaaatttcagtctctgacct |
9149709 |
T |
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| Q |
104 |
aatataaacccattcgatagataaacag-caaactaaattgtcgtttaagataagggagaaaaa-------attgatttgctcaaaatcaaaaagtacaa |
195 |
Q |
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| T |
9149708 |
aatataaacccatttgatggattaacagaaaaactaaa---tagtttaagataagggagaaaaagcccacggttgatttgctcaaaatcaaatagtatta |
9149612 |
T |
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| Q |
196 |
gtggcagcattaag |
209 |
Q |
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| T |
9149611 |
gtggcagcattaag |
9149598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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