View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_72 (Length: 244)
Name: NF16123_low_72
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7458420 - 7458662
Alignment:
| Q |
1 |
ttagttagagtttgttattagggcgttacttcattgatttgtagttattaccactgagaatcttagatggcacctcatgaacattnnnnnnntatgtttt |
100 |
Q |
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| T |
7458420 |
ttagttagagtttgttattagggcgttacttcgttgatttgtagttattaccactgagaatcttagatggcacctcatgaacattaaaaaaatatgtttt |
7458519 |
T |
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| Q |
101 |
agatcaatatctttttnnnnnnntggaccgacccaagatgtatggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaatt |
200 |
Q |
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| T |
7458520 |
agatcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcggtgaaatt |
7458619 |
T |
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| Q |
201 |
ccaatccttgtaaacaacagctgacatttcaacagaataatct |
243 |
Q |
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| T |
7458620 |
ccaatccttgtaaacaacagcagacatttcaacagcataatct |
7458662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 7470825 - 7471064
Alignment:
| Q |
4 |
gttagagtttgttattagggcgttacttcattgatttgtagttattaccactgagaatcttagatggcacctcatgaacattnnnnnnntatgttttaga |
103 |
Q |
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| T |
7470825 |
gttaaagtttgttattagggcgttacttcgttgatttgtagttattaccactgagaatcttagatggcacctcatgaatattaaaaaaatatgttttaga |
7470924 |
T |
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| Q |
104 |
tcaatatctttttnnnnnnntggaccgacccaagatgtatggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattcca |
203 |
Q |
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| T |
7470925 |
tcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattcca |
7471024 |
T |
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| Q |
204 |
atccttgtaaacaacagctgacatttcaacagaataatct |
243 |
Q |
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| T |
7471025 |
atccttgtaaacaacagcagacatttcgacagcataatct |
7471064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 6351745 - 6351826
Alignment:
| Q |
149 |
tgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc |
230 |
Q |
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| T |
6351745 |
tgtaaggttaccttttgattagatcgttaggtagtccttgctcaatgaaattccaatccttgtaaacaacagcagacatttc |
6351826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6362663 - 6362759
Alignment:
| Q |
134 |
caagatgtatggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc |
230 |
Q |
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| T |
6362663 |
caagatgtaatgttttgtaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttc |
6362759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 6409677 - 6409747
Alignment:
| Q |
146 |
ttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaaca |
216 |
Q |
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| T |
6409677 |
ttttgtaagcttaccttttgattagatcattaggtagtgcttgatccgggaaaacccaatccttgtaaaca |
6409747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 6390473 - 6390541
Alignment:
| Q |
147 |
tttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaac |
215 |
Q |
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| T |
6390473 |
tttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaac |
6390541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 6369544 - 6369607
Alignment:
| Q |
167 |
ttagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc |
230 |
Q |
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| T |
6369544 |
ttagatcagtaggtagtccttcttcagcgaaaacccaatccttgtaaacaacagctgacatttc |
6369607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 6274003 - 6274067
Alignment:
| Q |
145 |
gttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatcctt |
209 |
Q |
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| T |
6274003 |
gttttttaaggttaccttttgagtagatcattaggcaaaccttgctctttaaaattccaatcctt |
6274067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 6423598 - 6423670
Alignment:
| Q |
158 |
accttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc |
230 |
Q |
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| T |
6423598 |
accttttgagtagatcattaggtagcccttgctcagtgaaaacccaatccctatatgcaacagcagacatttc |
6423670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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