View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_low_77 (Length: 230)
Name: NF16123_low_77
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 43062131 - 43061932
Alignment:
| Q |
13 |
agcaaaggcaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagccta |
112 |
Q |
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| T |
43062131 |
agcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagccta |
43062032 |
T |
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| Q |
113 |
aggtcaaatgtgacctcaaagttccattgaaattaaacaataatgcaacctttaccttcacccgggttttgcccgacaaatgcaatgttgtgttctaggt |
212 |
Q |
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| T |
43062031 |
aggtcaaatgtgacctcaaagttccattgaaatcaaacaataatgcaacctttaccttcacccgggttttgcccgaaaaatgcaatgttgtgttctaggt |
43061932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 43054871 - 43054751
Alignment:
| Q |
22 |
aagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaat |
121 |
Q |
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| T |
43054871 |
aagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggagactccatatccagaaagttcaaacctaaggtcaaat |
43054772 |
T |
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| Q |
122 |
gtgacctcaaagttccattga |
142 |
Q |
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| T |
43054771 |
gcgacctcacagttcctttga |
43054751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 43049344 - 43049217
Alignment:
| Q |
15 |
caaaggcaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaag |
114 |
Q |
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| T |
43049344 |
caaagacaagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatcgggtgattacaagcctaag |
43049245 |
T |
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| Q |
115 |
gtcaaatgtgacctcaaagttccattga |
142 |
Q |
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| T |
43049244 |
gtgaaatgtgacttcaaagttcctttga |
43049217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 43024186 - 43024145
Alignment:
| Q |
22 |
aagagtgttggagtttatggtatctatgtgaagctctacttc |
63 |
Q |
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| T |
43024186 |
aagagtgttgaagtttatgatatctatgtgaaactctacttc |
43024145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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