View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_low_80 (Length: 205)

Name: NF16123_low_80
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_low_80
NF16123_low_80
[»] chr3 (7 HSPs)
chr3 (1-187)||(3579089-3579275)
chr3 (59-158)||(3578998-3579093)
chr3 (78-187)||(3549296-3549405)
chr3 (141-187)||(3545609-3545655)
chr3 (9-70)||(3545531-3545592)
chr3 (78-135)||(3545573-3545630)
chr3 (97-153)||(3548883-3548939)
[»] chr4 (3 HSPs)
chr4 (105-153)||(5342215-5342263)
chr4 (77-153)||(25222705-25222781)
chr4 (96-176)||(25222463-25222543)
[»] chr8 (1 HSPs)
chr8 (77-147)||(38542464-38542534)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 3579089 - 3579275
Alignment:
Q  1 aaggaccgtgggatttatggtgaggtgatggagcgcgtgatggcgagtgacggtgaggggagggaccatgagagttgtggtgaggggatggagcttgtga 100  Q
    ||||||| || |||||||| | |||||||||||||  ||||||| ||||||||||||  |||||||||||||| |  |||||||||||||||||||||||    
T  3579089 aaggaccatgagatttatgataaggtgatggagcgaatgatggcaagtgacggtgagaagagggaccatgagattgatggtgaggggatggagcttgtga 3579188  T
Q  101 tggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcaggagcagatgatggtttgtgacgggttataaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  3579189 tggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgacgggaaggagcagatgatggtttgtgacgggttataaa 3579275  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 3578998 - 3579093
Alignment:
Q  59 ggagggaccatgagagttgtggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcagga 158  Q
    ||||||||||||||| | ||||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  3578998 ggagggaccatgagattggtggtgagggga----gcttgtgatggtgagtgatgagggtggtgaggggaatgagcaggagattggtggtgaggggaagga 3579093  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 3549296 - 3549405
Alignment:
Q  78 tggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcaggagcagatgatggtttgtgac 177  Q
    |||||| |||||||| | |||||||| ||||||||| ||||||||| |||||||||||||| | |||||||||||| | |||||||||||||||||||||    
T  3549296 tggtgatgggatggaccatgtgatggcgagtgatggtggtggtgagaggaatgagcaggaggtcggtggtgaggggaatgagcagatgatggtttgtgac 3549395  T
Q  178 gggttataaa 187  Q
    || |||||||    
T  3549396 ggcttataaa 3549405  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 3545609 - 3545655
Alignment:
Q  141 tggtggtgaggggcaggagcagatgatggtttgtgacgggttataaa 187  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  3545609 tggtggtgaggggaatgagcagatgatggtttgtgacgggttataaa 3545655  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 3545531 - 3545592
Alignment:
Q  9 tgggatttatggtgaggtgatggagcgcgtgatggcgagtgacggtgaggggagggaccatg 70  Q
    ||||||||||||||| | ||||||||| ||||||| |||||| ||||| |||||||||||||    
T  3545531 tgggatttatggtgatgagatggagcgggtgatggtgagtgatggtgatgggagggaccatg 3545592  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 3545573 - 3545630
Alignment:
Q  78 tggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcag 135  Q
    |||||| |||| ||| | |||||||| ||| ||||| |||||||||||||||||||||    
T  3545573 tggtgatgggagggaccatgtgatggcgagcgatggtggtggtgaggggaatgagcag 3545630  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 3548883 - 3548939
Alignment:
Q  97 gtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgagggg 153  Q
    ||||||||||||| ||| ||||| |||| ||| ||||| ||||||| ||||||||||    
T  3548883 gtgatggtgagtgctggtggtggcgaggagaaggagcatgagattgatggtgagggg 3548939  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 5342263 - 5342215
Alignment:
Q  105 gagtgatgggggtggtgaggggaatgagcaggagattggtggtgagggg 153  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  5342263 gagtgatggtggtggtgaggagaacgagcaggagattggtggtgagggg 5342215  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 25222781 - 25222705
Alignment:
Q  77 gtggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgagggg 153  Q
    |||||||||||| ||||   ||||||| ||||||||| |||||||||| ||| ||||  ||||||||||||||||||    
T  25222781 gtggtgaggggaaggagagggtgatggcgagtgatggtggtggtgaggagaaggagcgagagattggtggtgagggg 25222705  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 25222543 - 25222463
Alignment:
Q  96 tgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggtgaggggcaggagcagatgatggtttgtga 176  Q
    ||||||||||||||| || | |||||||||||| | ||  |||||| ||||||| ||| | |||||  |||||||||||||    
T  25222543 tgtgatggtgagtgaaggtgatggtgaggggaaggtgcgagagattcgtggtgaagggaatgagcatgtgatggtttgtga 25222463  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 38542464 - 38542534
Alignment:
Q  77 gtggtgaggggatggagcttgtgatggtgagtgatgggggtggtgaggggaatgagcaggagattggtggt 147  Q
    ||||||| |||| |||||| ||||||||||||||  | ||||||||||||||   || |||||||||||||    
T  38542464 gtggtgacgggagggagctggtgatggtgagtgaaagtggtggtgaggggaagacgcgggagattggtggt 38542534  T

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