View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_high_12 (Length: 479)

Name: NF16124_high_12
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_high_12
NF16124_high_12
[»] chr4 (9 HSPs)
chr4 (78-460)||(14178673-14179056)
chr4 (78-460)||(14173919-14174302)
chr4 (78-460)||(28611568-28611951)
chr4 (78-460)||(28606806-28607189)
chr4 (81-461)||(44161571-44161950)
chr4 (83-461)||(11104456-11104830)
chr4 (158-460)||(48826702-48827000)
chr4 (263-433)||(48708086-48708256)
chr4 (189-348)||(24726288-24726442)
[»] chr8 (5 HSPs)
chr8 (78-460)||(12930658-12931040)
chr8 (78-460)||(12935404-12935786)
chr8 (247-367)||(26504945-26505063)
chr8 (257-369)||(15588948-15589060)
chr8 (407-452)||(26504850-26504895)
[»] chr1 (1 HSPs)
chr1 (78-460)||(34907121-34907503)
[»] chr7 (7 HSPs)
chr7 (78-460)||(37040426-37040809)
chr7 (81-460)||(15290223-15290594)
chr7 (81-461)||(12098988-12099362)
chr7 (83-312)||(12082002-12082227)
chr7 (223-303)||(2757370-2757448)
chr7 (378-461)||(12084669-12084752)
chr7 (400-437)||(2757236-2757273)
[»] chr5 (4 HSPs)
chr5 (78-460)||(42910993-42911372)
chr5 (85-461)||(29106877-29107249)
chr5 (278-368)||(38997230-38997320)
chr5 (380-460)||(38994699-38994779)
[»] chr2 (1 HSPs)
chr2 (78-460)||(8539165-8539548)
[»] chr3 (3 HSPs)
chr3 (78-241)||(51302143-51302306)
chr3 (378-460)||(51302937-51303019)
chr3 (333-369)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (278-461)||(2100198-2100379)
chr6 (235-285)||(2100723-2100771)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 78 - 460
Target Start/End: Original strand, 14178673 - 14179056
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178673 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 14178772  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14178773 ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaa 14178870  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||            
T  14178871 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttt 14178970  T
Q  375 nnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
       |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178971 attgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 14179056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 78 - 460
Target Start/End: Original strand, 14173919 - 14174302
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14173919 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 14174018  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14174019 ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaa 14174116  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||            
T  14174117 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttt 14174216  T
Q  375 nnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
        ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174217 atcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 14174302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 78 - 460
Target Start/End: Complemental strand, 28611951 - 28611568
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611951 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 28611852  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  28611851 ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaa 28611754  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||            
T  28611753 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttcatttttttt 28611654  T
Q  375 nnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
       |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611653 atcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 28611568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 78 - 460
Target Start/End: Complemental strand, 28607189 - 28606806
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607189 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 28607090  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  28607089 ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaa 28606992  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |            
T  28606991 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttaatttttttt 28606892  T
Q  375 nnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
       |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606891 atcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 28606806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 81 - 461
Target Start/End: Original strand, 44161571 - 44161950
Alignment:
Q  81 tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt 180  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161571 tgtgtgtagaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt 44161670  T
Q  181 gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatat 280  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||    
T  44161671 gctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctcttgtgtgtgt--aagagagtggagaga--attgtaatat 44161766  T
Q  281 tctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnn 377  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||               
T  44161767 tctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatc 44161866  T
Q  378 gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 461  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161867 gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 44161950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 83 - 461
Target Start/End: Original strand, 11104456 - 11104830
Alignment:
Q  83 tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc 182  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||     
T  11104456 tgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgt 11104555  T
Q  183 tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattc 282  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||   ||||||  ||||||||||||||||||||||||||||    
T  11104556 tataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt---tgtgtgtaagagagtggagagaatattgtaatattc 11104652  T
Q  283 tttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngctac 382  Q
    ||  |||| ||||||||||||||||||||||||||||||| || |||||  ||||||||| ||||| | ||||||||||||||||||        |||||    
T  11104653 ttagatatggtggaatatttttcggagtttgtcccgtggt-ttaccctcgatattagaggattttctatgttaaatattggtgttcatttttatcgctac 11104751  T
Q  383 cgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 461  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104752 agctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 11104830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 158 - 460
Target Start/End: Complemental strand, 48827000 - 48826702
Alignment:
Q  158 tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga 257  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||   ||||||||||||||||||||||||||||||||||||||   |||    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga 48826903  T
Q  258 gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa 357  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| ||||||||||||||    
T  48826902 gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa 48826804  T
Q  358 tattggtgttc-annnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagccc 456  Q
    |||||||||||          |||||||||| ||||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||||||||| |||    
T  48826803 tattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccc 48826706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 433
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
Q  263 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg 362  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || |||||||||||    
T  48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
Q  363 gtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttaca 433  Q
    || || |        || ||| ||| | || ||||| |||| ||||||  |||||||||||||||||||||    
T  48708156 gtatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca 48708086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 348
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
Q  189 ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat 288  Q
    |||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| |||  ||     ||||| ||||||||||||| | || |||||||||    
T  24726442 ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat 24726348  T
Q  289 atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc 348  Q
    ||| ||||||||||||| ||||||||| |||||  |||||||   ||||||| |||||||    
T  24726347 ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 78 - 460
Target Start/End: Original strand, 12930658 - 12931040
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930658 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 12930757  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12930758 ggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaa 12930855  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnn 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||            
T  12930856 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttta 12930955  T
Q  376 nngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
      |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930956 tcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 12931040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 78 - 460
Target Start/End: Original strand, 12935404 - 12935786
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935404 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 12935503  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12935504 ggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaa 12935601  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnn 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||            
T  12935602 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttta 12935701  T
Q  376 nngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
      |||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935702 tcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 12935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 367
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
Q  247 tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt 346  Q
    ||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| |||   ||||||| ||| |    
T  26505063 tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat 26504965  T
Q  347 tccacgttaaatattggtgtt 367  Q
    | |||||||||||||| ||||    
T  26504964 t-cacgttaaatattgatgtt 26504945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 369
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q  257 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa 356  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || | |||| |||| || ||||||||||| ||   |||    
T  15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
Q  357 atattggtgttca 369  Q
    |||||| ||||||    
T  15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
Q  407 ttttggattttggaattttaatttacacttgcgttaagctcgtcga 452  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||    
T  26504895 ttttggattttgaaattttaatttacacttccattaaactcgtcga 26504850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 78 - 460
Target Start/End: Original strand, 34907121 - 34907503
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907121 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 34907220  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  34907221 ggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaa 34907318  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnn 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||            
T  34907319 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttta 34907418  T
Q  376 nngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
      |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907419 tcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 34907503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 78 - 460
Target Start/End: Complemental strand, 37040809 - 37040426
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37040809 ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttcta 37040710  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  37040709 ggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtgtgag--agagtggagaaaatattgtaa 37040612  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||            
T  37040611 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttt 37040512  T
Q  375 nnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
       |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37040511 atcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 37040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 81 - 460
Target Start/End: Original strand, 15290223 - 15290594
Alignment:
Q  81 tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt 180  Q
    ||||||||||||||||||||||      ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15290223 tgtgtgtagaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggt 15290315  T
Q  181 gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatat 280  Q
    |||  ||||  |||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  15290316 gctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgtatctcttgtgtgtgtaagag--agtggagagaatattgtaatat 15290410  T
Q  281 tctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnn 377  Q
    |||| |||||||||||| || ||| ||||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||               
T  15290411 tcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatc 15290510  T
Q  378 gctaccgctgtgctgcaagatccaatctc-ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
    ||||  |||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15290511 gctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttacaattgcgttaagctcgtcgagcccaaca 15290594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 81 - 461
Target Start/End: Original strand, 12098988 - 12099362
Alignment:
Q  81 tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt 180  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||| |||||  | | |  |||||| |  | ||| |||||||||||||||||| |||||    
T  12098988 tgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattgagtgagtatcatctctataacttttaggt 12099083  T
Q  181 gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatat 280  Q
    | ||||| |||||| |||| |||||| |||  |||||||  ||||||| ||||||| ||||||||| |||| ||||  ||||||||||||||||||||||    
T  12099084 gttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag--agtggagagaatattgtaatat 12099181  T
Q  281 tctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngct 380  Q
    ||||||||||||| |||  |||||||||||||||||| |||| ||||| ||   ||||||||||||| ||||| |||||||| | ||||        |||    
T  12099182 tctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaaatattgcttttcatttttatcgct 12099281  T
Q  381 accgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 461  Q
    | || || |||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  12099282 atcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagcccaacat 12099362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 83 - 312
Target Start/End: Original strand, 12082002 - 12082227
Alignment:
Q  83 tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc 182  Q
    |||||||||||||||||  |||||| |||||||||| ||||||||||| |  | |||||||||| | ||||| ||||| |||||||||||||||||| ||    
T  12082002 tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgc 12082100  T
Q  183 tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattc 282  Q
    ||||| |||||| |||| |||||| ||   ||||||   |||||||||||||||||||||| |  ||||   |||||||||||| |||||||||||||||    
T  12082101 tataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctcttttccgtgt--aagagagtggagaaaatattgtaatattc 12082198  T
Q  283 tttaatatagtggaatatttttcggagttt 312  Q
     ||||||||||||||||||||| |||||||    
T  12082199 -ttaatatagtggaatattttttggagttt 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
Q  223 aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt 303  Q
    |||||||||||||||||||||| |||||  | ||||||||||||||||| || |||||| || ||||||||||||||||||    
T  2757448 aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt 2757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 378 - 461
Target Start/End: Original strand, 12084669 - 12084752
Alignment:
Q  378 gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 461  Q
    ||||||| || ||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||||    
T  12084669 gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaacat 12084752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 2757273 - 2757236
Alignment:
Q  400 caatctcttttggattttggaattttaatttacacttg 437  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  2757273 caatttcttttgaattttggaattttaatttacacttg 2757236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 78 - 460
Target Start/End: Complemental strand, 42911372 - 42910993
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||     
T  42911372 ctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttctt 42911273  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaa 277  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  42911272 ggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatcttttgtgtgtgtgag--agagtggagagaatattgtaa 42911175  T
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn 377  Q
    ||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||            
T  42911174 tattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttcatttttatc 42911076  T
Q  378 gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
    | | |||||| ||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  42911075 gttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttgcgttaagctcgtcgagcccaaca 42910993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 85 - 461
Target Start/End: Complemental strand, 29107249 - 29106877
Alignment:
Q  85 tgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgct 183  Q
    |||||||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  29107249 tgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgct 29107152  T
Q  184 ataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattct 283  Q
    | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  29107151 aaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagag--tggagagaatattgtaatattct 29107055  T
Q  284 ttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngctacc 383  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||        ||||||    
T  29107054 ttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaacgctacc 29106955  T
Q  384 gctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 461  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  29106954 gctgcgctgcaagatccaatcttttttggattttggaattttaatttacacttgcattaagctcctcgatcccaacat 29106877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc 368  Q
    |||||||||||||| |||| ||||||| |||||||||||||| || ||||  ||  ||||||||||||||| |||| |||||||| |||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 460
Target Start/End: Complemental strand, 38994779 - 38994699
Alignment:
Q  380 taccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
    ||||||||  |||||||||||||| |  ||||| |||||||||||||||||||||| || ||||| ||||| |||||||||    
T  38994779 taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaaca 38994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 78 - 460
Target Start/End: Original strand, 8539165 - 8539548
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||    
T  8539165 ctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataactttta 8539264  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacact---atattgtatctcttgtgtgtgtgagagagagtggagagaatattg 274  Q
    |||||| ||| ||||||||| | |||||| ||| |||||||| |||||||||   ||||||||||||||||||||||   |||||||||||| |||||||    
T  8539265 ggtgctgtaaaataatagcaatcgaataggagtgggtctcac-ggaaacactataatattgtatctcttgtgtgtgt--aagagagtggagataatattg 8539361  T
Q  275 taatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca-nnnn 373  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||         
T  8539362 taatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttcattttt 8539461  T
Q  374 nnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
        | |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  8539462 tattgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 8539548  T

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Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 51302143 - 51302306
Alignment:
Q  78 ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta 177  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  51302143 ctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttcta 51302242  T
Q  178 ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc 241  Q
    |||||||||| | ||| ||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  51302243 ggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc 51302306  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 51302937 - 51303019
Alignment:
Q  378 gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 460  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  51302937 gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaaca 51303019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
Q  333 gtattagagggttttccacgttaaatattggtgttca 369  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302308 gtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 278 - 461
Target Start/End: Complemental strand, 2100379 - 2100198
Alignment:
Q  278 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn 377  Q
    |||||||||||||||||||||||||||||||||||| |||   || |||| |||| ||||| |||||||||||| |||||||||| ||||||            
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc 2100283  T
Q  378 gctaccgctgtgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacat 461  Q
      || || |||||||||| | || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2100282 attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaacat 2100198  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
Q  235 gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt 285  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  2100771 gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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