View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_13 (Length: 472)
Name: NF16124_high_13
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_13 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 2659 - 3070
Alignment:
| Q |
9 |
caagaatatgtacaatttattagccgaatgattaaacgatgaattatcatttatgatgctgcaattgtttctagtttcgcactttcttgagttattcgac |
108 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2659 |
caagaaaatgtacaattttttagccgaatgattaaacgatgaattatcatttatgatgctgcaattgtttctagtttcgcactttcttgagttattcgac |
2758 |
T |
|
| Q |
109 |
gatatttcaagcattcagaagaatcaactgtggctaccggtgaaacaaagcgccggttcaagaagctcacccatatctttgatggcagagataaactatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2759 |
gatatttcaagcattcagaagaatcaactgtggctaccggtgaaacaaagcgccggttcaagaagctcacccatatctttgatggcagagataaactatt |
2858 |
T |
|
| Q |
209 |
gtcaaggccttttcggaaagatcaaatcaacgacgaagaaaaagggagtcgacaatctttgtgaagtttctttgacaggaagtcatctttattctcaaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2859 |
gtcaaggccttttcggaaagatcaaatcaacgacgaagaaaaagggagtcaacaatctttgtcaagtttctttgacaggaagtcatctttattctcaaag |
2958 |
T |
|
| Q |
309 |
aagcctcccaaaggtggaaacttggcccctgccgagacaaatcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgca |
408 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2959 |
aagcctcccaaagggggaaacttggcccctgccgagacaactcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgca |
3058 |
T |
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| Q |
409 |
aatttctaacct |
420 |
Q |
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| T |
3059 |
aatttctaacct |
3070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 13950519 - 13950930
Alignment:
| Q |
9 |
caagaatatgtacaatttattagccgaatgattaaacgatgaattatcatttatgatgctgcaattgtttctagtttcgcactttcttgagttattcgac |
108 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950519 |
caagaaaatgtacaattttttagccgaatgattaaacgatgaattatcatttatgatgctgcaattgtttctagtttcgcactttcttgagttattcgac |
13950618 |
T |
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| Q |
109 |
gatatttcaagcattcagaagaatcaactgtggctaccggtgaaacaaagcgccggttcaagaagctcacccatatctttgatggcagagataaactatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950619 |
gatatttcaagcattcagaagaatcaactgtggctaccggtgaaacaaagcgccggttcaagaagctcacccatatctttgatggcagagataaactatt |
13950718 |
T |
|
| Q |
209 |
gtcaaggccttttcggaaagatcaaatcaacgacgaagaaaaagggagtcgacaatctttgtgaagtttctttgacaggaagtcatctttattctcaaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13950719 |
gtcaaggccttttcggaaagatcaaatcaacgacgaagaaaaagggagtcaacaatctttgtcaagtttctttgacaggaagtcatctttattctcaaag |
13950818 |
T |
|
| Q |
309 |
aagcctcccaaaggtggaaacttggcccctgccgagacaaatcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgca |
408 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950819 |
aagcctcccaaagggggaaacttggcccctgccgagacaactcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgca |
13950918 |
T |
|
| Q |
409 |
aatttctaacct |
420 |
Q |
| |
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|||||||||||| |
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| T |
13950919 |
aatttctaacct |
13950930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 117 - 358
Target Start/End: Original strand, 20901777 - 20902018
Alignment:
| Q |
117 |
aagcattcagaagaatcaactgtggctaccggtgaaacaaagcgccggttcaagaagctcacccatatctttgatggcagagataaactattgtcaaggc |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||| |
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| T |
20901777 |
aagcattcagaagaatcaactgtgactaccggtgaaacaaagcgccggttcaagaagctcagccatatctttgctggcaaagataaactgttgtcaaggt |
20901876 |
T |
|
| Q |
217 |
cttttcggaaagatcaaatcaacgacgaagaaaaagggagtcgacaatctttgtgaagtttctttgacaggaagtcatctttattctcaaagaagcctcc |
316 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20901877 |
cttttcggaaagaccaaatcaacgatgaagaaaaagggagtcgacaatctttttcaagtttctttgacaggaagtcatctttattctcaaagaagcctcc |
20901976 |
T |
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| Q |
317 |
caaaggtggaaacttggcccctgccgagacaaatcactctct |
358 |
Q |
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|||| |||||||||||||| |||| ||||||| ||||||||| |
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| T |
20901977 |
caaacgtggaaacttggccgctgctgagacaactcactctct |
20902018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 20900981 - 20901076
Alignment:
| Q |
24 |
tttattagccgaatgattaaacgatgaattatcatttatgatgctgcaattgtttctagtttcgcactttcttgagttattcgacgatatttcaag |
119 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |||||||||||||||||||||||| |
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| T |
20900981 |
tttattagctgaataattaaacgatgaattatcatttatgatgctgtaattgtttctagttttgcgttttcatgagttattcgacgatatttcaag |
20901076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 20902085 - 20902142
Alignment:
| Q |
364 |
aaattatataagtgttccttctttctcatacaaatg-caaattgcaaatttctaacct |
420 |
Q |
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|||||||||| ||||||| |||||||||||||||| ||||||||||| |||| |||| |
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| T |
20902085 |
aaattatatatatgttcctactttctcatacaaatgtcaaattgcaaaattcttacct |
20902142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 40703705 - 40703763
Alignment:
| Q |
258 |
cgacaatctttgtgaagtttctttgacaggaagtcatctttattctcaaagaagcctcc |
316 |
Q |
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||||||||||| | |||||||||||| | |||||||||||||| |||||||||||||| |
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| T |
40703705 |
cgacaatctttctcaagtttctttgaaaacaagtcatctttattttcaaagaagcctcc |
40703763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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