View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_18 (Length: 388)
Name: NF16124_high_18
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 3916 - 4274
Alignment:
| Q |
11 |
gaagaattggtagccgtcttcaacaacctgtatgagtaaatttacaataagtttgtttagtttattcaataatggataaatgaatgaatgatcaatgtgt |
110 |
Q |
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| T |
3916 |
gaagaattggtagccgtcttcaacaacctgtatgagtaaatttacaataagtttgtttagtttattcaataatggataaatgaatgaatgatcaatgtgt |
4015 |
T |
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| Q |
111 |
agtgtagtagtgaataacaaaattaacctgatgagcccgacatataagatcgagatcgnnnnnnnncaagaactcatctaccgtgtctggtccaaatgtg |
210 |
Q |
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| T |
4016 |
agtgtagtggtgaataacaaaattaacctgatgagcccgacatataagatcgagatcgtttttcttcaagaactcatctaccgtgtctggtccaaatgtg |
4115 |
T |
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| Q |
211 |
taggaaacgccacgatcattctctccccaccctttaacttctgtgtctggatcggaccaaaggagatcacataggaggccctggtctggaacatccaacg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116 |
taggaaacgccacgatcattctctccccaccctttaacttctgtgtctggatcggaccaaaggagatcacataggaggccctggtctggaacatccaacg |
4215 |
T |
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| Q |
311 |
gcctttctatagctttgatttgattcaagctctccatctcgggagaaaggccaccgtgc |
369 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4216 |
gcctttctatagctttgatttgattcaaactctccatctcgggagaaaggccaccgtgc |
4274 |
T |
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