View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_high_20 (Length: 387)
Name: NF16124_high_20
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 42424946 - 42425316
Alignment:
| Q |
1 |
aggttagtccttctaaatctcaaatgtcaatcaaaatagttgctagcaaggactaaaatgttcctatatatgaaatgaaaaatgattgttaaagtttgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42424946 |
aggttagtccttctaaatctcaaatgtcaatcaaaatagttgctagcaaggactaaaatgttcctatatatgaaatgaaaaatgattgttaaagtttgtc |
42425045 |
T |
|
| Q |
101 |
actaacaattatattgtcatcattattaatggaagtaattttatgaaacttaaggactaaatggagattaacaaaaaacaatctaacttaggtttaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42425046 |
actaacaattatattgtcatcattattaatggaagtaattttatgaaacttaaggactaaatggagattaacaaaaaacaatctaacttaggtttaaata |
42425145 |
T |
|
| Q |
201 |
accctaaataaagctaaagttctatcaaacnnnnnnngaggaaaaaatgtttaacaaacttgactaaaagtgtcttgtgatgttgagagaaagggtgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42425146 |
accctaaataaagctaaagttctatcaaactttatttgaggaaaaaatgtttaacaaacttgactaaaagtgtcttgtgatgttgagagaaagggtgacc |
42425245 |
T |
|
| Q |
301 |
aaataattggttgttgatttcttggctaagaacaagcaatttctttgtgtttgaaaagaacgagcaatttc |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42425246 |
aaataattggttgttgatttcttggctaagaacaagcaatttctttgtgtttgaaaagaacgagcaatttc |
42425316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University