View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_high_22 (Length: 373)

Name: NF16124_high_22
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_high_22
NF16124_high_22
[»] chr7 (14 HSPs)
chr7 (1-370)||(22912987-22913356)
chr7 (3-245)||(22897590-22897832)
chr7 (15-260)||(22804669-22804914)
chr7 (15-260)||(22893286-22893531)
chr7 (15-262)||(22814360-22814607)
chr7 (15-214)||(22825591-22825790)
chr7 (15-214)||(22875261-22875460)
chr7 (15-214)||(22888631-22888830)
chr7 (15-214)||(22839385-22839584)
chr7 (15-260)||(22808953-22809198)
chr7 (15-214)||(22830364-22830563)
chr7 (17-148)||(22879927-22880058)
chr7 (96-214)||(22857852-22857970)
chr7 (132-262)||(22885053-22885183)
[»] chr1 (1 HSPs)
chr1 (15-260)||(21151136-21151381)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 22912987 - 22913356
Alignment:
Q  1 cgagatttctatgacgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22912987 cgagatttctatgacgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctc 22913086  T
Q  101 gagttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913087 gagttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatct 22913186  T
Q  201 ttgtacttgaatctttgagttccatagtctttctcccaatcttcatgaagctcagaaaacattttcttccttttgatgaaatgaaatattgctatagcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913187 ttgtacttgaatctttgagttccatagtctttctcccaatcttcatgaagctcagaaaacattttcttccttttgatgaaatgaaatattgctatagcta 22913286  T
Q  301 ccattagaatcaaacatagtgaaatcaaaggcaacccaattttcaaaactaccttagaatcatgtttttc 370  Q
    |||||||||||||||||||||||||||||||||| |||||  ||| || | |||||||||||||||||||    
T  22913287 ccattagaatcaaacatagtgaaatcaaaggcaaaccaataatcataattgccttagaatcatgtttttc 22913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 22897590 - 22897832
Alignment:
Q  3 agatttctatgacgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcga 102  Q
    ||||| ||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||| || ||||| |    
T  22897590 agattcctatgacgaagacgaccgatactaacaatttccgacacgaattccctcatcccttgtcttgattcatgtgaaaccctcttcactgcaacctcaa 22897689  T
Q  103 gttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatcttt 202  Q
    |||| |||   |||||||||||||||||||||||||||||||||||   |||||||||  |||| ||||||||||||||||| |||||||| ||||||||    
T  22897690 gtttggaacctggcatcacacctttgtagactctaccaaatccaccaactcctaatagacccttttccttgaaaccctttgtggcaaagtacaaatcttt 22897789  T
Q  203 gtacttgaatctttgagttccatagtctttctcccaatcttca 245  Q
    | |||| || || ||||  ||||| || | |||||||||||||    
T  22897790 gaacttaaacctatgagggccatattcatgctcccaatcttca 22897832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 22804669 - 22804914
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  || |||||| |||||||||||||||||||||| || || || ||||| || ||||| ||||| ||| | |    
T  22804669 cgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaacttg 22804768  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    |||||||||||||||| |||||||||||||||||   ||| |||||| |||| ||| ||||||||||||| |||||||||| ||||||| |||| |||||    
T  22804769 gcatcacacctttgtatactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgtggcaaagtatagatctttgaacttaaatct 22804868  T
Q  215 ttgagttccatagtctttctcccaatcttcatgaagctcagaaaac 260  Q
     || |  ||||| ||||  |||||||||||| ||| ||||||||||    
T  22804869 atgtgggccatattcttgttcccaatcttcaagaatctcagaaaac 22804914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 22893286 - 22893531
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  || |||||| |||||||||||||||||||||| || || || ||||| || ||||| ||||| ||| | |    
T  22893286 cgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaacttg 22893385  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | | ||||||||||||||||||||||||||||||   ||| | |||| |||| ||| ||||||||||||| |||||||| ||||||||| |||| |||||    
T  22893386 gtaacacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggcaaagtacaaatctttgaacttaaatct 22893485  T
Q  215 ttgagttccatagtctttctcccaatcttcatgaagctcagaaaac 260  Q
     || |  ||||| ||||  |||||||||||| ||| ||||| ||||    
T  22893486 atgtgggccatattcttgttcccaatcttcaagaatctcagcaaac 22893531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 22814360 - 22814607
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  || |||||| |||||||||||||||| || ||||| || || ||||| || ||||| ||||| ||| |||    
T  22814360 cgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgactcgtgtgacacccttttcacagcaacctcaagtttggaactcg 22814459  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | ||||||||||||||||||||||||||||||||   ||| | |||| | || ||| |||| |||||||| |||||||||| ||||||| |||| |||||    
T  22814460 gtatcacacctttgtagactctaccaaatccaccaactcccagtagccctttttccctgaacccctttgtggcaaagtatagatctttgaacttaaatct 22814559  T
Q  215 ttgagttccatagtctttctcccaatcttcatgaagctcagaaaacat 262  Q
     || |  ||||| || |  |||||||||||| ||| ||||| ||||||    
T  22814560 atgtgggccatattcatgttcccaatcttcaagaatctcagcaaacat 22814607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 22825591 - 22825790
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||| || || || ||||| || ||||| | ||| ||| | |    
T  22825591 cgaagacgaccgatactaacaatttccgacacgaattccctcatcccttgtcttgattcatgagagacccttttcacagcaacctcaattttggaacttg 22825690  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | || |||||||||||||||||||||||||||||   ||| | |||||| || ||| ||||||||||||| |||||||||| ||||||| |||| |||||    
T  22825691 gtatgacacctttgtagactctaccaaatccaccaactcccagtagctcgttttccctgaaaccctttgtagcaaagtatagatctttgaacttaaatct 22825790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 22875261 - 22875460
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  || |||||| |||||||||||||||||||||| || || || ||||| || ||||| ||||| ||| |      
T  22875261 cgaagacgaccaatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaacttt 22875360  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | ||||||||||||||||||||||||||||||||   ||| |||||| |||| ||| ||||||||||||| ||  |||||| ||||||| |||| |||||    
T  22875361 gtatcacacctttgtagactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct 22875460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 22888631 - 22888830
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  || |||||| |||||||||||||||||||||| || || || ||||| || ||||| ||||| ||| |      
T  22888631 cgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaacttt 22888730  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | ||||||||||||||||||||||||||||||||   ||| |||||| |||| ||| ||||||||||||| ||  |||||| ||||||| |||| |||||    
T  22888731 gtatcacacctttgtagactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct 22888830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 22839385 - 22839584
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  || |||||| ||||||||||| |||||||||  || || || ||||| || ||||| ||||| ||| | |    
T  22839385 cgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgttttgattcattagacacccttttcacagcaacctcaagtttggaacttg 22839484  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | ||||||||||||||||||||||||||||||||   ||| | |||| |||| ||| |||||||||| || ||| |||||| ||||||| |||| |||||    
T  22839485 gtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaacccttcgtggcagagtatagatctttgaacttaaatct 22839584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 22808953 - 22809198
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||| ||||||||||  || |||||| |||||||||||||||||||||  || || || ||||| || ||||| ||||| ||| |      
T  22808953 cgaagacgaccgatactgacaatttccgacacaaattccctcatcccttgtcttgattcattagacacccttttcacagcaacctcaagtttggaacttt 22809052  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | ||||||||||||||||||||||||||||||||   ||||| |||  |||| |||  |||||| ||||| ||||| |||| ||||||| |||| |||||    
T  22809053 gtatcacacctttgtagactctaccaaatccaccaactcctagtagacccttttccccgaaaccttttgtagcaaaatatagatctttgaacttaaatct 22809152  T
Q  215 ttgagttccatagtctttctcccaatcttcatgaagctcagaaaac 260  Q
     || |  ||||| || |  |||||||||||| ||| ||||| ||||    
T  22809153 atgtggaccatattcctgttcccaatcttcaagaatctcagcaaac 22809198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 22830364 - 22830563
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||| || || || ||||| || || |  ||||| ||| | |    
T  22830364 cgaagacgaccgatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttgaagtttggaacttg 22830463  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | |||||||||||||||||| |||||||||||||   ||| | || | |||| ||| |||||||||| || ||| |||||| ||||||| |||| |||||    
T  22830464 gtatcacacctttgtagactttaccaaatccaccaactcccagtatccccttttccctgaaacccttcgtggcagagtatagatctttgaacttaaatct 22830563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 22879927 - 22880058
Alignment:
Q  17 aagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggc 116  Q
    ||||||||| ||||| |||||||||   || |||||| |||||||||||||||||||||| || || || ||||| || ||||| |||||  || | ||     
T  22879927 aagacgaccaatactgacaatttcccgcacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaagtttgaaacttggt 22880026  T
Q  117 atcacacctttgtagactctaccaaatccacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  22880027 atcacacctttgtagactctaccaaatccacc 22880058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 22857852 - 22857970
Alignment:
Q  96 acctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtata 195  Q
    ||||| ||||| ||| | || ||||||||||||||||||||||||||||||||   ||| || ||| ||||  || ||||||||||||| ||||||||||    
T  22857852 acctcaagtttggaatttggtatcacacctttgtagactctaccaaatccaccaactcccaacagcccctttaccatgaaaccctttgtggcaaagtata 22857951  T
Q  196 aatctttgtacttgaatct 214  Q
     ||||||| |||| |||||    
T  22857952 tatctttgaacttaaatct 22857970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 22885053 - 22885183
Alignment:
Q  132 actctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatctttgagttccatagtctt 231  Q
    |||||||||||||||||   | | |||||| |||| ||| ||||||||||||| |||||||||| ||||||| |||| ||||| ||||  ||||| || |    
T  22885053 actctaccaaatccaccaacttccaatagccccttttccatgaaaccctttgtagcaaagtatagatctttgaacttaaatctatgagggccatattcat 22885152  T
Q  232 tctcccaatcttcatgaagctcagaaaacat 262  Q
      |||||||||||| ||| ||||| ||||||    
T  22885153 gttcccaatcttcaagaatctcagcaaacat 22885183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 21151381 - 21151136
Alignment:
Q  15 cgaagacgacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcg 114  Q
    ||||||||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||| || || || ||||| || || || ||||| ||| |||    
T  21151381 cgaagacgaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaagtttggaactcg 21151282  T
Q  115 gcatcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct 214  Q
    | ||||||||||||||||||||||||||||||||   ||| | |||  |||| |||  |||||| ||||| ||||| |||| ||||||| |||| |||||    
T  21151281 gtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtagcaaaatatagatctttgaacttaaatct 21151182  T
Q  215 ttgagttccatagtctttctcccaatcttcatgaagctcagaaaac 260  Q
     || |  ||||| || |  |||||||||||| ||| ||||||||||    
T  21151181 atgtgggccatattcatgttcccaatcttcaagaatctcagaaaac 21151136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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