View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_23 (Length: 370)
Name: NF16124_high_23
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 33066168 - 33065807
Alignment:
| Q |
6 |
tggacatcatcaatttgagaataggtctcatatgaaatagaagagtatttgagtaattgttgttgtcaatgttattaac-atagatgatagatgtaaatt |
104 |
Q |
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| T |
33066168 |
tggatatcatcaatttgaaaatagatctcgtatgaaatagaaaagtatttgagtgattattgttgtcaatgctattatggatggatgatagaagtaaatt |
33066069 |
T |
|
| Q |
105 |
gtaaaa--------gagtgtttaattactg-tctaaagattataataagagatagaagcaaaatatactattctacaatttatttgtaaagaatgctgca |
195 |
Q |
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| T |
33066068 |
gtgaaattatgaaagggtgtttaattactggtctaaagattataataagagattgaagcaaaatatactattctacaatttatttgtaaagaatgcggca |
33065969 |
T |
|
| Q |
196 |
attcttggaaaattaggaaaacaaatttccttcctttnnnnnnnttgcttgttgtatcatttcaaaatacaaatcttatattttctttcagaaaaataga |
295 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
33065968 |
attcttggaaaattaggaaaacaaatttccttcctctaaaaaaattgcttgttgtatcatttcaaaatacgactcttatattttctttcagaaaaataga |
33065869 |
T |
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| Q |
296 |
aactcttatatttaaacatttctaacttttatgcattcattcaaactttacatatttcccct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33065868 |
aactcttatatttaaacatttctaacttttatgcattcattcaaactttacatttttcccct |
33065807 |
T |
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