View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_3 (Length: 698)
Name: NF16124_high_3
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Original strand, 49552655 - 49553330
Alignment:
| Q |
1 |
gtaacatctgctaccagattaccgaaatgcagttatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcaggt |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552655 |
gtaacatctgctactagattaccgaaatgcagtcatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcaggt |
49552754 |
T |
|
| Q |
101 |
tcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552755 |
tcaatattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaa |
49552854 |
T |
|
| Q |
201 |
gcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49552855 |
gcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatctcttgttcttgcagtgttatgtttttaccatg |
49552954 |
T |
|
| Q |
301 |
tcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttccattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552955 |
tcttccatgttgacagtaacagaagataagctttatgcattcaatgattgataatggagtaggttttcttgtcttccacgtgcctttggaatttccattc |
49553054 |
T |
|
| Q |
401 |
atttatataaatttagatact--cgcgnnnnnnnnnntcattgtaaatacatgaaactcaagcattgactacgactgtgctcttttaaacaggacattat |
498 |
Q |
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|||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
49553055 |
attt------atttagatacttgcgagaaaaaaaaaatcattgtaaatacatgaaactcaagcattgactacgaccgtg--cttttaaataggacattat |
49553146 |
T |
|
| Q |
499 |
attttcccaagcagaacacattctagattgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggttac |
598 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49553147 |
atcttcccaagcagaacacattctagattgtgcatgaaaacttcgatgaagagatagagggggtccagaacaatgagagatggggttatgtgaaggttaa |
49553246 |
T |
|
| Q |
599 |
attggacaaaaatgttcttctcaccatcacttttgctccaaaacattaagaaaatgctcaagtttagcaattcaattagaagac |
682 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49553247 |
catggagaaaaatgttcttctcaccatcacttttgctccaaaacattaagaaaatgctcaagtttagcaattcaattagaagac |
49553330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 203 - 397
Target Start/End: Original strand, 49537536 - 49537730
Alignment:
| Q |
203 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtc |
302 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |
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| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttaccatgtc |
49537635 |
T |
|
| Q |
303 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttcca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
49537636 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttggaatttcca |
49537730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 518 - 597
Target Start/End: Original strand, 49538498 - 49538578
Alignment:
| Q |
518 |
attctagat-tgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
597 |
Q |
| |
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||||||||| ||| ||||||||| | ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
49538498 |
attctagatctgtccatgaaaactttgatgaagagatagagggagtacagagcaatgagagatgggcttatgtgaaggtta |
49538578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 49537361 - 49537541
Alignment:
| Q |
1 |
gtaacatctgctaccagattaccgaaa-tgcagttatgacaaatgtgtaggcc-atgggtacatcgttacctctacatgaaatatatgttggttcagcag |
98 |
Q |
| |
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||||| ||||||| ||||||| |||| ||||||||||| |||||| ||| | | ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
49537361 |
gtaacttctgctagtagattactgaaactgcagttatgagaaatgtatagccagaagggtacatcaatacctctaaatgaaatatatgttggttcagcag |
49537460 |
T |
|
| Q |
99 |
gttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaa-agtctgaacatt |
183 |
Q |
| |
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|||| || || | ||||| |||| ||||| | ||||||| |||||||||||| |||||| ||| |||| |||||||||||| |
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| T |
49537461 |
attcaata-tcatataata----ctttccatttgctttcttgagttactttcacaattaaaaaactgatacaagagtctgaacatt |
49537541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 12547425 - 12547378
Alignment:
| Q |
606 |
aaaaatgttcttctcaccatcacttttgctccaaaacattaagaaaat |
653 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||| |||||||| |
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| T |
12547425 |
aaaaatgctcttctcaccatcattttttctccaaaacatcaagaaaat |
12547378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 33220397 - 33220444
Alignment:
| Q |
606 |
aaaaatgttcttctcaccatcacttttgctccaaaacattaagaaaat |
653 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
33220397 |
aaaaatggtcttctcaccatcatttttgctccaaaacactaaaaaaat |
33220444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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