View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_high_35 (Length: 295)
Name: NF16124_high_35
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 42895728 - 42895593
Alignment:
| Q |
1 |
atgggcatgaagggaaacgagatacattgataggtgaataaacacaaatgagagcaaacctttatgaaggtttgagtcatgcattttggatgagaattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
42895728 |
atgggcatgaagggaaacgagatacattgataggtgaataaacacaaatgagagcaaacctttatgaaggtttgagtcat----------aaaggtttat |
42895639 |
T |
|
| Q |
101 |
gcaaaaggaagcaaaatgtaaagaaaaaaatatcatggacatcaaag |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42895638 |
gcaaaaggaagcaaaatgtaaag-aaaaaatatcatggacatcaaag |
42895593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 42895567 - 42895465
Alignment:
| Q |
176 |
caaaacacatcaaattatcaaaataattttatttagctaaggaagggggagg-nnnnnnnnnggtggaaaaaaggttggcatttatcatctgacgtaata |
274 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42895567 |
caaaacacatcaaatgatcaaaataattttatttagctaaggaagggggaggaaaaaaaataggtggaaaaaaggttggcatttatcatctgacgtaata |
42895468 |
T |
|
| Q |
275 |
tct |
277 |
Q |
| |
|
||| |
|
|
| T |
42895467 |
tct |
42895465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University